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BETA
  • SUMMARY

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  • BRAIN

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  • RPL10A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:3190.4 nTPM
Monaco:866.3 nTPM
Schmiedel:894.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3190.4
HPA sample nTPM
Memory B-cell
nTPM: 3190.4
Samples: 6

Max nTPM: 4842.6
Min nTPM: 2204.1
P10809_1017 2204.1
P10809_1025 3158.4
P10809_1044 4842.6
P10809_1063 3053.0
P10809_1092 3018.7
P10809_1105 2865.6
Naive B-cell
nTPM: 2820.1
Samples: 6

Max nTPM: 4457.8
Min nTPM: 1866.3
P10809_1011 1866.3
P10809_1029 2404.7
P10809_1048 4457.8
P10809_1067 2637.7
P10809_1091 2732.2
P10809_1104 2822.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

866.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 866.3
Samples: 4

Max nTPM: 1699.1
Min nTPM: 321.7
RHH5310_R3677 758.4
RHH5218_R3590 321.7
RHH5247_R3619 1699.1
RHH5276_R3648 686.1
Naive B-cell
nTPM: 778.1
Samples: 4

Max nTPM: 1044.6
Min nTPM: 486.1
RHH5308_R3675 1005.2
RHH5216_R3588 486.1
RHH5245_R3617 1044.6
RHH5274_R3646 576.5
Non-switched memory B-cell
nTPM: 704.1
Samples: 4

Max nTPM: 951.5
Min nTPM: 435.8
RHH5309_R3676 951.5
RHH5217_R3589 435.8
RHH5246_R3618 713.6
RHH5275_R3647 715.3
Plasmablast
nTPM: 669.4
Samples: 4

Max nTPM: 815.4
Min nTPM: 503.3
RHH5312_R3679 815.4
RHH5220_R3592 503.3
RHH5249_R3621 693.3
RHH5278_R3650 665.6
Switched memory B-cell
nTPM: 718.4
Samples: 4

Max nTPM: 1049.3
Min nTPM: 529.2
RHH5311_R3678 1049.3
RHH5219_R3591 689.3
RHH5248_R3620 529.2
RHH5277_R3649 605.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

894.1
Schmiedel sample id TPM
Naive B-cell
TPM: 894.1
Samples: 91

Max TPM: 1227.4
Min TPM: 579.5
B_CELL_NAIVE_1 1227.4
B_CELL_NAIVE_2 1139.1
B_CELL_NAIVE_3 1113.7
B_CELL_NAIVE_4 1095.0
B_CELL_NAIVE_5 1084.6
B_CELL_NAIVE_6 1068.3
B_CELL_NAIVE_7 1065.3
B_CELL_NAIVE_8 1051.9
B_CELL_NAIVE_9 1040.6
B_CELL_NAIVE_10 1037.9
B_CELL_NAIVE_11 1033.4
B_CELL_NAIVE_12 1028.1
B_CELL_NAIVE_13 1022.4
B_CELL_NAIVE_14 1015.3
B_CELL_NAIVE_15 1014.2
B_CELL_NAIVE_16 1014.1
B_CELL_NAIVE_17 1011.7
B_CELL_NAIVE_18 1010.9
B_CELL_NAIVE_19 1008.2
B_CELL_NAIVE_20 1006.0
B_CELL_NAIVE_21 1005.2
B_CELL_NAIVE_22 1005.0
B_CELL_NAIVE_23 996.0
B_CELL_NAIVE_24 980.3
B_CELL_NAIVE_25 972.0
B_CELL_NAIVE_26 970.9
B_CELL_NAIVE_27 970.3
B_CELL_NAIVE_28 964.0
B_CELL_NAIVE_29 959.5
B_CELL_NAIVE_30 958.8
B_CELL_NAIVE_31 954.3
B_CELL_NAIVE_32 949.7
B_CELL_NAIVE_33 943.2
B_CELL_NAIVE_34 935.2
B_CELL_NAIVE_35 932.6
B_CELL_NAIVE_36 922.4
B_CELL_NAIVE_37 919.2
B_CELL_NAIVE_38 908.1
B_CELL_NAIVE_39 907.7
B_CELL_NAIVE_40 898.3
B_CELL_NAIVE_41 897.0
B_CELL_NAIVE_42 890.9
B_CELL_NAIVE_43 889.3
B_CELL_NAIVE_44 888.8
B_CELL_NAIVE_45 885.1
B_CELL_NAIVE_46 880.7
B_CELL_NAIVE_47 876.0
B_CELL_NAIVE_48 873.8
B_CELL_NAIVE_49 873.6
B_CELL_NAIVE_50 868.4
B_CELL_NAIVE_51 866.7
B_CELL_NAIVE_52 863.9
B_CELL_NAIVE_53 861.8
B_CELL_NAIVE_54 858.3
B_CELL_NAIVE_55 857.4
B_CELL_NAIVE_56 855.3
B_CELL_NAIVE_57 853.6
B_CELL_NAIVE_58 850.9
B_CELL_NAIVE_59 848.4
B_CELL_NAIVE_60 845.7
B_CELL_NAIVE_61 842.2
B_CELL_NAIVE_62 840.6
B_CELL_NAIVE_63 837.9
B_CELL_NAIVE_64 835.9
B_CELL_NAIVE_65 833.8
B_CELL_NAIVE_66 831.0
B_CELL_NAIVE_67 828.6
B_CELL_NAIVE_68 827.2
B_CELL_NAIVE_69 825.8
B_CELL_NAIVE_70 823.4
B_CELL_NAIVE_71 807.3
B_CELL_NAIVE_72 805.2
B_CELL_NAIVE_73 783.3
B_CELL_NAIVE_74 781.4
B_CELL_NAIVE_75 780.2
B_CELL_NAIVE_76 778.7
B_CELL_NAIVE_77 778.3
B_CELL_NAIVE_78 767.6
B_CELL_NAIVE_79 758.0
B_CELL_NAIVE_80 757.0
B_CELL_NAIVE_81 750.8
B_CELL_NAIVE_82 745.9
B_CELL_NAIVE_83 744.4
B_CELL_NAIVE_84 738.2
B_CELL_NAIVE_85 734.2
B_CELL_NAIVE_86 718.5
B_CELL_NAIVE_87 707.4
B_CELL_NAIVE_88 667.4
B_CELL_NAIVE_89 666.9
B_CELL_NAIVE_90 660.5
B_CELL_NAIVE_91 579.5
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