A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1236.1
nTPM
Monaco:
429.9
nTPM
Schmiedel:
486.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1236.1
HPA sample
nTPM
Classical monocyte nTPM: 1236.1
Samples: 6
Max nTPM: 1750.0
Min nTPM: 899.8
P10809_1003
1750.0
P10809_1020
1020.0
P10809_1039
1397.0
P10809_1058
1051.4
P10809_1080
899.8
P10809_1107
1298.4
Intermediate monocyte nTPM: 1212.2
Samples: 6
Max nTPM: 1713.5
Min nTPM: 863.5
P10809_1004
1044.0
P10809_1023
1371.3
P10809_1042
1336.7
P10809_1061
863.5
P10809_1081
944.4
P10809_1108
1713.5
Non-classical monocyte nTPM: 1083.2
Samples: 5
Max nTPM: 1419.9
Min nTPM: 790.3
P10809_1005
1117.1
P10809_1053
1058.9
P10809_1072
1029.8
P10809_1082
790.3
P10809_1109
1419.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
429.9
Monaco sample
nTPM
Classical monocyte nTPM: 324.6
Samples: 4
Max nTPM: 372.2
Min nTPM: 290.3
RHH5313_R3680
372.2
RHH5221_R3593
290.3
RHH5250_R3622
291.0
RHH5279_R3651
344.9
Intermediate monocyte nTPM: 430.0
Samples: 4
Max nTPM: 515.5
Min nTPM: 387.7
RHH5314_R3681
515.5
RHH5222_R3594
387.7
RHH5251_R3623
419.3
RHH5280_R3652
397.3
Non-classical monocyte nTPM: 306.4
Samples: 4
Max nTPM: 392.3
Min nTPM: 238.2
RHH5315_R3682
392.3
RHH5223_R3595
238.2
RHH5252_R3624
300.0
RHH5281_R3653
295.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
486.9
Schmiedel sample id
TPM
Classical monocyte TPM: 486.9
Samples: 91
Max TPM: 703.9
Min TPM: 326.5
MONOCYTES_1
703.9
MONOCYTES_2
610.7
MONOCYTES_3
607.3
MONOCYTES_4
601.5
MONOCYTES_5
598.2
MONOCYTES_6
594.8
MONOCYTES_7
593.4
MONOCYTES_8
575.0
MONOCYTES_9
575.0
MONOCYTES_10
573.2
MONOCYTES_11
572.5
MONOCYTES_12
569.5
MONOCYTES_13
566.0
MONOCYTES_14
564.1
MONOCYTES_15
559.9
MONOCYTES_16
559.1
MONOCYTES_17
558.7
MONOCYTES_18
553.8
MONOCYTES_19
548.0
MONOCYTES_20
547.9
MONOCYTES_21
541.4
MONOCYTES_22
538.6
MONOCYTES_23
535.7
MONOCYTES_24
535.3
MONOCYTES_25
533.3
MONOCYTES_26
531.9
MONOCYTES_27
528.8
MONOCYTES_28
527.4
MONOCYTES_29
524.4
MONOCYTES_30
523.8
MONOCYTES_31
522.0
MONOCYTES_32
519.8
MONOCYTES_33
514.2
MONOCYTES_34
511.3
MONOCYTES_35
510.9
MONOCYTES_36
510.0
MONOCYTES_37
508.1
MONOCYTES_38
505.5
MONOCYTES_39
505.3
MONOCYTES_40
503.2
MONOCYTES_41
500.6
MONOCYTES_42
496.8
MONOCYTES_43
496.5
MONOCYTES_44
495.2
MONOCYTES_45
494.8
MONOCYTES_46
494.5
MONOCYTES_47
491.3
MONOCYTES_48
487.6
MONOCYTES_49
486.8
MONOCYTES_50
484.2
MONOCYTES_51
482.3
MONOCYTES_52
480.6
MONOCYTES_53
478.8
MONOCYTES_54
473.6
MONOCYTES_55
461.2
MONOCYTES_56
460.4
MONOCYTES_57
459.6
MONOCYTES_58
459.4
MONOCYTES_59
457.9
MONOCYTES_60
456.4
MONOCYTES_61
456.0
MONOCYTES_62
446.0
MONOCYTES_63
444.6
MONOCYTES_64
444.4
MONOCYTES_65
439.6
MONOCYTES_66
439.6
MONOCYTES_67
438.2
MONOCYTES_68
437.2
MONOCYTES_69
436.9
MONOCYTES_70
436.5
MONOCYTES_71
434.5
MONOCYTES_72
432.4
MONOCYTES_73
432.4
MONOCYTES_74
421.8
MONOCYTES_75
419.6
MONOCYTES_76
419.2
MONOCYTES_77
412.5
MONOCYTES_78
407.2
MONOCYTES_79
398.4
MONOCYTES_80
398.4
MONOCYTES_81
394.3
MONOCYTES_82
393.1
MONOCYTES_83
388.7
MONOCYTES_84
386.2
MONOCYTES_85
381.7
MONOCYTES_86
375.3
MONOCYTES_87
371.4
MONOCYTES_88
350.5
MONOCYTES_89
346.9
MONOCYTES_90
337.5
MONOCYTES_91
326.5
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Non-classical monocyte TPM: 411.7
Samples: 90
Max TPM: 616.1
Min TPM: 245.0
M2_1
616.1
M2_2
562.6
M2_3
530.4
M2_4
510.2
M2_5
507.0
M2_6
496.0
M2_7
495.3
M2_8
490.4
M2_9
485.3
M2_10
479.9
M2_11
477.9
M2_12
476.8
M2_13
473.6
M2_14
470.4
M2_15
469.7
M2_16
468.3
M2_17
465.9
M2_18
464.8
M2_19
462.3
M2_20
456.6
M2_21
455.3
M2_22
455.0
M2_23
447.9
M2_24
445.6
M2_25
444.6
M2_26
440.6
M2_27
437.9
M2_28
437.8
M2_29
437.2
M2_30
436.4
M2_31
436.1
M2_32
435.6
M2_33
432.1
M2_34
430.2
M2_35
429.9
M2_36
429.5
M2_37
428.4
M2_38
428.3
M2_39
428.1
M2_40
426.1
M2_41
425.0
M2_42
424.8
M2_43
423.7
M2_44
423.0
M2_45
422.9
M2_46
418.9
M2_47
417.4
M2_48
415.6
M2_49
412.4
M2_50
407.6
M2_51
406.3
M2_52
403.1
M2_53
397.7
M2_54
396.8
M2_55
396.1
M2_56
395.6
M2_57
393.7
M2_58
391.2
M2_59
387.7
M2_60
383.6
M2_61
383.0
M2_62
380.4
M2_63
378.0
M2_64
377.8
M2_65
376.3
M2_66
376.1
M2_67
373.3
M2_68
372.5
M2_69
371.6
M2_70
368.8
M2_71
362.4
M2_72
360.0
M2_73
358.1
M2_74
348.8
M2_75
347.7
M2_76
345.5
M2_77
345.0
M2_78
344.6
M2_79
343.5
M2_80
330.5
M2_81
326.8
M2_82
323.9
M2_83
322.2
M2_84
316.0
M2_85
313.2
M2_86
309.1
M2_87
304.4
M2_88
303.9
M2_89
296.3
M2_90
245.0
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