A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2075.1
nTPM
Monaco:
259.7
nTPM
Schmiedel:
523.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2075.1
HPA sample
nTPM
NK-cell nTPM: 2075.1
Samples: 6
Max nTPM: 2605.4
Min nTPM: 1379.5
P10809_1013
1554.9
P10809_1033
2242.8
P10809_1052
2125.7
P10809_1071
2605.4
P10809_1093
1379.5
P10809_1103
2542.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
259.7
Monaco sample
nTPM
NK-cell nTPM: 259.7
Samples: 4
Max nTPM: 298.4
Min nTPM: 213.8
RHH5316_R3683
298.4
RHH5224_R3596
231.0
RHH5253_R3625
213.8
RHH5282_R3654
295.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
523.8
Schmiedel sample id
TPM
NK-cell TPM: 523.8
Samples: 90
Max TPM: 912.9
Min TPM: 303.1
NK_1
912.9
NK_2
728.2
NK_3
708.9
NK_4
686.7
NK_5
669.6
NK_6
666.9
NK_7
662.6
NK_8
641.2
NK_9
635.6
NK_10
634.5
NK_11
625.5
NK_12
615.2
NK_13
608.2
NK_14
605.9
NK_15
605.0
NK_16
603.9
NK_17
603.0
NK_18
599.9
NK_19
599.2
NK_20
597.7
NK_21
596.9
NK_22
594.8
NK_23
590.6
NK_24
582.6
NK_25
578.6
NK_26
578.4
NK_27
577.9
NK_28
574.0
NK_29
569.2
NK_30
568.7
NK_31
566.9
NK_32
558.7
NK_33
557.0
NK_34
555.1
NK_35
554.8
NK_36
552.8
NK_37
551.8
NK_38
550.0
NK_39
545.4
NK_40
544.3
NK_41
530.1
NK_42
528.1
NK_43
524.6
NK_44
520.8
NK_45
510.3
NK_46
503.9
NK_47
503.9
NK_48
503.7
NK_49
500.5
NK_50
499.4
NK_51
497.0
NK_52
494.6
NK_53
490.1
NK_54
488.0
NK_55
488.0
NK_56
482.9
NK_57
482.6
NK_58
481.5
NK_59
481.2
NK_60
480.1
NK_61
479.1
NK_62
476.0
NK_63
472.5
NK_64
472.0
NK_65
471.3
NK_66
470.4
NK_67
467.6
NK_68
463.8
NK_69
458.0
NK_70
457.9
NK_71
453.9
NK_72
451.1
NK_73
447.3
NK_74
441.9
NK_75
439.5
NK_76
432.1
NK_77
425.2
NK_78
423.0
NK_79
416.5
NK_80
414.5
NK_81
403.3
NK_82
397.4
NK_83
397.2
NK_84
397.1
NK_85
392.1
NK_86
391.6
NK_87
391.1
NK_88
350.7
NK_89
330.7
NK_90
303.1
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