MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:163.0 nTPM
GTEx:30.4 nTPM
FANTOM5:118.0 Scaled Tags Per Million
Pig:109.7 nTPM
Mouse:42.5 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 163.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.4
2666 Male, age 74, left hemisphere 162.3
2586 Male, age 75, left hemisphere 159.0
2828 Female, age 72, unknown 158.6
1827 Male, age 72, unknown 146.3
2411 Female, age 72, unknown 136.8
1870 Female, age 42, unknown 125.1
1830 Male, age 51, unknown 122.3
1833 Male, age 53, unknown 119.9
2219 Male, age 76, both hemispheres 107.6
2019 Male, age 18, unknown 96.1
Dorsal raphe nucleus
nTPM: 122.6
2047 Male, age 72, unknown 138.6
2298 Female, age 72, unknown 130.2
2750 Male, age 76, both hemispheres 126.6
1828 Male, age 53, unknown 115.5
2016 Female, age 72, unknown 102.1
Inferior colliculus
nTPM: 124.9
2849 Male, age 72, unknown 139.2
1848 Female, age 42, unknown 130.9
2097 Female, age 72, unknown 118.7
1890 Male, age 53, unknown 110.9
Median raphe nucleus
nTPM: 134.3
2220 Male, age 76, midline 134.3
Periaquaductal grey, anterior
nTPM: 163.0
2502 Female, age 75, unknown 191.6
1947 Male, age 18, unknown 154.6
1795 Male, age 51, unknown 142.9
Periaquaductal grey, dorsal
nTPM: 125.4
2464 Female, age 72, unknown 138.4
1840 Male, age 53, unknown 136.2
1831 Male, age 72, unknown 115.7
2850 Male, age 76, both hemispheres 111.1
Periaquaductal grey, lateral
nTPM: 115.4
2053 Male, age 18, unknown 137.3
2140 Male, age 76, both hemispheres 113.5
2272 Male, age 74, both hemispheres 95.3
Pretectal area
nTPM: 136.7
1816 Male, age 51, unknown 161.1
2667 Female, age 75, unknown 156.7
2825 Male, age 18, unknown 152.3
1817 Female, age 42, unknown 143.3
2007 Male, age 72, unknown 141.8
1944 Female, age 72, unknown 136.1
1815 Male, age 53, unknown 132.7
2407 Male, age 75, both hemispheres 132.3
2224 Female, age 72, unknown 126.5
2316 Male, age 76, right hemisphere 123.5
2273 Male, age 74, both hemispheres 97.1
Red nucleus
nTPM: 111.3
2588 Male, age 74, left hemisphere 136.8
2503 Female, age 72, unknown 119.1
2725 Female, age 75, unknown 119.1
2785 Male, age 18, unknown 115.8
2769 Male, age 72, unknown 108.7
2227 Male, age 72, unknown 108.0
1954 Female, age 42, unknown 107.4
1904 Male, age 53, unknown 107.1
1865 Male, age 51, unknown 106.9
1821 Female, age 72, unknown 103.2
2584 Male, age 75, left hemisphere 101.8
2823 Male, age 76, right hemisphere 101.2
Substantia nigra
nTPM: 94.5
1889 Female, age 72, unknown 119.2
2665 Male, age 74, both hemispheres 113.6
1916 Female, age 42, unknown 113.0
1941 Male, age 53, unknown 112.2
2583 Male, age 75, right hemisphere 94.3
1851 Male, age 51, unknown 92.6
2241 Male, age 72, unknown 88.1
2699 Male, age 18, unknown 82.6
2590 Female, age 75, unknown 65.1
2409 Female, age 72, unknown 63.8
Superior colliculus
nTPM: 138.0
2664 Male, age 75, both hemispheres 202.0
2261 Male, age 18, unknown 154.4
1796 Male, age 53, unknown 145.0
1839 Male, age 51, unknown 140.9
2087 Female, age 72, unknown 138.9
2668 Female, age 75, unknown 130.9
2587 Male, age 74, left hemisphere 125.2
1895 Male, age 76, right hemisphere 118.5
1913 Female, age 42, unknown 115.4
1995 Male, age 72, unknown 108.9
Ventral tegmental area
nTPM: 113.2
2223 Female, age 72, unknown 125.6
1942 Male, age 51, unknown 115.9
2410 Female, age 72, unknown 115.1
2021 Male, age 53, unknown 109.9
2218 Male, age 76, both hemispheres 107.9
1915 Female, age 42, unknown 105.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 183

Max nTPM: 104.4
Min nTPM: 7.5
Std nTPM: 12.6
Median nTPM: 28.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 104.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 66.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 65.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 64.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 63.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 54.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 53.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 50.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.0
FF:10158-103A5 76 years, female 118.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 109.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.5
Samples: 4

Max nTPM: 118.0
Min nTPM: 87.6
Sample A Female 116.4
Sample B Female 87.6
Sample C Male 118.0
Sample D Male 111.9
Midbrain
nTPM: 109.7
Samples: 4

Max nTPM: 156.1
Min nTPM: 90.2
Sample A Female 156.1
Sample B Female 97.5
Sample C Male 94.8
Sample D Male 90.2
Periaqueductal gray
nTPM: 98.8
Samples: 3

Max nTPM: 109.4
Min nTPM: 93.0
Sample B Female 94.1
Sample C Male 109.4
Sample D Male 93.0
Superior colliculi
nTPM: 101.8
Samples: 4

Max nTPM: 111.7
Min nTPM: 88.7
Sample A Female 111.7
Sample B Female 97.0
Sample C Male 88.7
Sample D Male 109.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 45.3
Min nTPM: 40.9
Sample A Male 41.9
Sample B Male 40.9
Sample C Female 41.9
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70439177 Antisense, RP_050614_03_D01, Mouse strain C57BL/6J (56 days, male) 1.2

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