A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4614.2
nTPM
Monaco:
682.7
nTPM
Schmiedel:
1396.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4614.2
HPA sample
nTPM
Memory B-cell nTPM: 4614.2
Samples: 6
Max nTPM: 5454.0
Min nTPM: 3324.7
P10809_1017
4201.1
P10809_1025
5013.5
P10809_1044
3324.7
P10809_1063
5454.0
P10809_1092
4539.8
P10809_1105
5152.3
Naive B-cell nTPM: 4101.3
Samples: 6
Max nTPM: 5233.4
Min nTPM: 2651.7
P10809_1011
3758.1
P10809_1029
4237.3
P10809_1048
2651.7
P10809_1067
5233.4
P10809_1091
3728.7
P10809_1104
4998.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
682.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 656.5
Samples: 4
Max nTPM: 1050.6
Min nTPM: 131.5
RHH5310_R3677
517.3
RHH5218_R3590
131.5
RHH5247_R3619
1050.6
RHH5276_R3648
926.6
Naive B-cell nTPM: 682.7
Samples: 4
Max nTPM: 1511.4
Min nTPM: 163.8
RHH5308_R3675
575.7
RHH5216_R3588
163.8
RHH5245_R3617
1511.4
RHH5274_R3646
479.7
Non-switched memory B-cell nTPM: 463.7
Samples: 4
Max nTPM: 947.8
Min nTPM: 177.8
RHH5309_R3676
531.5
RHH5217_R3589
197.6
RHH5246_R3618
177.8
RHH5275_R3647
947.8
Plasmablast nTPM: 408.7
Samples: 4
Max nTPM: 526.4
Min nTPM: 168.4
RHH5312_R3679
526.4
RHH5220_R3592
168.4
RHH5249_R3621
435.2
RHH5278_R3650
504.6
Switched memory B-cell nTPM: 438.5
Samples: 4
Max nTPM: 709.9
Min nTPM: 259.9
RHH5311_R3678
470.4
RHH5219_R3591
313.7
RHH5248_R3620
259.9
RHH5277_R3649
709.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1396.2
Schmiedel sample id
TPM
Naive B-cell TPM: 1396.2
Samples: 91
Max TPM: 2144.4
Min TPM: 338.3
B_CELL_NAIVE_1
2144.4
B_CELL_NAIVE_2
2025.3
B_CELL_NAIVE_3
1937.1
B_CELL_NAIVE_4
1867.9
B_CELL_NAIVE_5
1866.6
B_CELL_NAIVE_6
1800.2
B_CELL_NAIVE_7
1731.1
B_CELL_NAIVE_8
1720.5
B_CELL_NAIVE_9
1700.3
B_CELL_NAIVE_10
1694.6
B_CELL_NAIVE_11
1679.9
B_CELL_NAIVE_12
1624.9
B_CELL_NAIVE_13
1620.6
B_CELL_NAIVE_14
1592.4
B_CELL_NAIVE_15
1584.7
B_CELL_NAIVE_16
1579.2
B_CELL_NAIVE_17
1575.6
B_CELL_NAIVE_18
1566.3
B_CELL_NAIVE_19
1551.4
B_CELL_NAIVE_20
1545.7
B_CELL_NAIVE_21
1534.3
B_CELL_NAIVE_22
1529.5
B_CELL_NAIVE_23
1526.6
B_CELL_NAIVE_24
1526.4
B_CELL_NAIVE_25
1522.3
B_CELL_NAIVE_26
1477.4
B_CELL_NAIVE_27
1474.8
B_CELL_NAIVE_28
1474.2
B_CELL_NAIVE_29
1464.3
B_CELL_NAIVE_30
1459.4
B_CELL_NAIVE_31
1458.2
B_CELL_NAIVE_32
1444.8
B_CELL_NAIVE_33
1441.3
B_CELL_NAIVE_34
1437.0
B_CELL_NAIVE_35
1429.3
B_CELL_NAIVE_36
1421.2
B_CELL_NAIVE_37
1421.1
B_CELL_NAIVE_38
1420.5
B_CELL_NAIVE_39
1418.8
B_CELL_NAIVE_40
1406.4
B_CELL_NAIVE_41
1403.5
B_CELL_NAIVE_42
1402.5
B_CELL_NAIVE_43
1402.1
B_CELL_NAIVE_44
1396.8
B_CELL_NAIVE_45
1390.5
B_CELL_NAIVE_46
1387.2
B_CELL_NAIVE_47
1386.1
B_CELL_NAIVE_48
1385.6
B_CELL_NAIVE_49
1382.8
B_CELL_NAIVE_50
1382.8
B_CELL_NAIVE_51
1382.1
B_CELL_NAIVE_52
1370.7
B_CELL_NAIVE_53
1362.2
B_CELL_NAIVE_54
1362.0
B_CELL_NAIVE_55
1360.8
B_CELL_NAIVE_56
1358.9
B_CELL_NAIVE_57
1357.5
B_CELL_NAIVE_58
1347.2
B_CELL_NAIVE_59
1303.4
B_CELL_NAIVE_60
1292.3
B_CELL_NAIVE_61
1289.4
B_CELL_NAIVE_62
1284.8
B_CELL_NAIVE_63
1283.9
B_CELL_NAIVE_64
1273.7
B_CELL_NAIVE_65
1262.7
B_CELL_NAIVE_66
1261.6
B_CELL_NAIVE_67
1244.8
B_CELL_NAIVE_68
1242.9
B_CELL_NAIVE_69
1232.9
B_CELL_NAIVE_70
1229.7
B_CELL_NAIVE_71
1227.9
B_CELL_NAIVE_72
1218.7
B_CELL_NAIVE_73
1216.5
B_CELL_NAIVE_74
1210.7
B_CELL_NAIVE_75
1202.1
B_CELL_NAIVE_76
1197.5
B_CELL_NAIVE_77
1197.0
B_CELL_NAIVE_78
1193.8
B_CELL_NAIVE_79
1188.3
B_CELL_NAIVE_80
1169.4
B_CELL_NAIVE_81
1165.3
B_CELL_NAIVE_82
1157.9
B_CELL_NAIVE_83
1148.8
B_CELL_NAIVE_84
1143.1
B_CELL_NAIVE_85
1141.0
B_CELL_NAIVE_86
1118.1
B_CELL_NAIVE_87
1105.1
B_CELL_NAIVE_88
1050.7
B_CELL_NAIVE_89
994.1
B_CELL_NAIVE_90
953.7
B_CELL_NAIVE_91
338.3
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