A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2148.4
nTPM
Monaco:
191.6
nTPM
Schmiedel:
559.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2148.4
HPA sample
nTPM
NK-cell nTPM: 2148.4
Samples: 6
Max nTPM: 2579.4
Min nTPM: 1163.6
P10809_1013
2310.5
P10809_1033
2540.4
P10809_1052
1989.8
P10809_1071
2579.4
P10809_1093
1163.6
P10809_1103
2306.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
191.6
Monaco sample
nTPM
NK-cell nTPM: 191.6
Samples: 4
Max nTPM: 222.6
Min nTPM: 164.9
RHH5316_R3683
195.5
RHH5224_R3596
164.9
RHH5253_R3625
222.6
RHH5282_R3654
183.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
559.9
Schmiedel sample id
TPM
NK-cell TPM: 559.9
Samples: 90
Max TPM: 1039.0
Min TPM: 280.2
NK_1
1039.0
NK_2
963.8
NK_3
939.4
NK_4
877.0
NK_5
836.9
NK_6
801.4
NK_7
791.8
NK_8
775.2
NK_9
765.5
NK_10
726.6
NK_11
712.5
NK_12
709.6
NK_13
704.1
NK_14
703.6
NK_15
695.0
NK_16
693.2
NK_17
690.3
NK_18
679.1
NK_19
654.3
NK_20
652.3
NK_21
650.0
NK_22
647.6
NK_23
646.9
NK_24
637.9
NK_25
631.0
NK_26
630.6
NK_27
629.1
NK_28
626.9
NK_29
623.4
NK_30
615.4
NK_31
609.4
NK_32
606.7
NK_33
605.1
NK_34
597.5
NK_35
590.0
NK_36
581.4
NK_37
577.4
NK_38
576.6
NK_39
574.3
NK_40
573.7
NK_41
571.4
NK_42
568.6
NK_43
560.1
NK_44
559.4
NK_45
559.1
NK_46
558.9
NK_47
556.8
NK_48
554.9
NK_49
544.0
NK_50
542.6
NK_51
541.7
NK_52
536.6
NK_53
528.5
NK_54
525.7
NK_55
525.3
NK_56
525.1
NK_57
517.7
NK_58
514.8
NK_59
509.7
NK_60
493.6
NK_61
490.8
NK_62
488.4
NK_63
485.9
NK_64
484.9
NK_65
479.4
NK_66
467.1
NK_67
458.6
NK_68
451.2
NK_69
438.0
NK_70
429.8
NK_71
426.5
NK_72
417.6
NK_73
408.7
NK_74
394.0
NK_75
393.7
NK_76
391.9
NK_77
388.1
NK_78
374.0
NK_79
373.9
NK_80
373.1
NK_81
365.8
NK_82
364.7
NK_83
353.1
NK_84
351.7
NK_85
346.3
NK_86
341.9
NK_87
321.3
NK_88
316.8
NK_89
302.0
NK_90
280.2
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