A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2619.0
nTPM
Monaco:
374.4
nTPM
Schmiedel:
695.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2619.0
HPA sample
nTPM
Classical monocyte nTPM: 2619.0
Samples: 6
Max nTPM: 4207.8
Min nTPM: 1697.0
P10809_1003
4207.8
P10809_1020
1899.8
P10809_1039
1697.0
P10809_1058
3068.2
P10809_1080
1822.2
P10809_1107
3019.1
Intermediate monocyte nTPM: 1829.1
Samples: 6
Max nTPM: 2915.4
Min nTPM: 1068.7
P10809_1004
1345.6
P10809_1023
1928.8
P10809_1042
1707.0
P10809_1061
1068.7
P10809_1081
2009.3
P10809_1108
2915.4
Non-classical monocyte nTPM: 1698.2
Samples: 5
Max nTPM: 2421.9
Min nTPM: 1261.5
P10809_1005
1468.5
P10809_1053
1445.0
P10809_1072
1261.5
P10809_1082
1894.2
P10809_1109
2421.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
374.4
Monaco sample
nTPM
Classical monocyte nTPM: 224.6
Samples: 4
Max nTPM: 330.7
Min nTPM: 122.3
RHH5313_R3680
330.7
RHH5221_R3593
218.6
RHH5250_R3622
122.3
RHH5279_R3651
227.0
Intermediate monocyte nTPM: 374.4
Samples: 4
Max nTPM: 505.2
Min nTPM: 193.2
RHH5314_R3681
324.0
RHH5222_R3594
475.0
RHH5251_R3623
505.2
RHH5280_R3652
193.2
Non-classical monocyte nTPM: 292.2
Samples: 4
Max nTPM: 438.8
Min nTPM: 128.3
RHH5315_R3682
438.8
RHH5223_R3595
302.4
RHH5252_R3624
299.4
RHH5281_R3653
128.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
695.6
Schmiedel sample id
TPM
Classical monocyte TPM: 695.6
Samples: 91
Max TPM: 919.0
Min TPM: 510.4
MONOCYTES_1
919.0
MONOCYTES_2
918.6
MONOCYTES_3
873.1
MONOCYTES_4
833.1
MONOCYTES_5
831.6
MONOCYTES_6
826.8
MONOCYTES_7
826.8
MONOCYTES_8
825.6
MONOCYTES_9
823.9
MONOCYTES_10
821.7
MONOCYTES_11
816.4
MONOCYTES_12
805.0
MONOCYTES_13
801.8
MONOCYTES_14
787.7
MONOCYTES_15
786.6
MONOCYTES_16
777.3
MONOCYTES_17
775.7
MONOCYTES_18
760.7
MONOCYTES_19
757.3
MONOCYTES_20
748.5
MONOCYTES_21
746.7
MONOCYTES_22
746.7
MONOCYTES_23
745.6
MONOCYTES_24
745.0
MONOCYTES_25
742.3
MONOCYTES_26
737.5
MONOCYTES_27
735.9
MONOCYTES_28
734.1
MONOCYTES_29
731.1
MONOCYTES_30
729.9
MONOCYTES_31
728.9
MONOCYTES_32
725.8
MONOCYTES_33
719.8
MONOCYTES_34
719.0
MONOCYTES_35
714.6
MONOCYTES_36
707.1
MONOCYTES_37
706.1
MONOCYTES_38
704.1
MONOCYTES_39
695.8
MONOCYTES_40
695.7
MONOCYTES_41
691.6
MONOCYTES_42
690.5
MONOCYTES_43
689.1
MONOCYTES_44
687.3
MONOCYTES_45
686.0
MONOCYTES_46
679.9
MONOCYTES_47
679.1
MONOCYTES_48
678.5
MONOCYTES_49
677.9
MONOCYTES_50
676.1
MONOCYTES_51
675.2
MONOCYTES_52
670.7
MONOCYTES_53
670.2
MONOCYTES_54
668.6
MONOCYTES_55
667.9
MONOCYTES_56
666.5
MONOCYTES_57
665.8
MONOCYTES_58
664.0
MONOCYTES_59
661.0
MONOCYTES_60
655.2
MONOCYTES_61
652.6
MONOCYTES_62
650.1
MONOCYTES_63
649.6
MONOCYTES_64
648.3
MONOCYTES_65
646.7
MONOCYTES_66
646.1
MONOCYTES_67
642.4
MONOCYTES_68
642.3
MONOCYTES_69
639.6
MONOCYTES_70
635.7
MONOCYTES_71
633.7
MONOCYTES_72
632.5
MONOCYTES_73
630.1
MONOCYTES_74
629.3
MONOCYTES_75
629.0
MONOCYTES_76
627.8
MONOCYTES_77
627.2
MONOCYTES_78
625.5
MONOCYTES_79
617.6
MONOCYTES_80
616.4
MONOCYTES_81
603.9
MONOCYTES_82
596.0
MONOCYTES_83
595.0
MONOCYTES_84
589.6
MONOCYTES_85
585.4
MONOCYTES_86
566.5
MONOCYTES_87
565.5
MONOCYTES_88
562.4
MONOCYTES_89
549.8
MONOCYTES_90
523.4
MONOCYTES_91
510.4
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Non-classical monocyte TPM: 621.2
Samples: 90
Max TPM: 905.9
Min TPM: 399.7
M2_1
905.9
M2_2
884.4
M2_3
883.2
M2_4
876.8
M2_5
866.9
M2_6
798.8
M2_7
773.4
M2_8
764.8
M2_9
762.8
M2_10
754.9
M2_11
751.5
M2_12
750.6
M2_13
738.0
M2_14
727.5
M2_15
721.5
M2_16
721.3
M2_17
706.2
M2_18
696.9
M2_19
695.4
M2_20
691.2
M2_21
691.0
M2_22
683.8
M2_23
680.1
M2_24
670.6
M2_25
663.7
M2_26
661.5
M2_27
661.0
M2_28
648.0
M2_29
646.0
M2_30
644.0
M2_31
642.2
M2_32
641.5
M2_33
633.6
M2_34
633.2
M2_35
633.2
M2_36
631.7
M2_37
631.5
M2_38
629.9
M2_39
628.7
M2_40
628.2
M2_41
618.6
M2_42
617.3
M2_43
617.3
M2_44
616.7
M2_45
603.3
M2_46
601.3
M2_47
599.7
M2_48
599.0
M2_49
595.4
M2_50
591.7
M2_51
588.9
M2_52
586.7
M2_53
586.1
M2_54
582.9
M2_55
582.5
M2_56
580.7
M2_57
579.4
M2_58
572.1
M2_59
571.5
M2_60
571.3
M2_61
571.1
M2_62
571.1
M2_63
564.5
M2_64
557.8
M2_65
556.1
M2_66
554.3
M2_67
552.0
M2_68
549.9
M2_69
546.0
M2_70
545.9
M2_71
545.8
M2_72
545.2
M2_73
543.7
M2_74
541.6
M2_75
538.4
M2_76
537.4
M2_77
535.9
M2_78
532.4
M2_79
519.9
M2_80
517.4
M2_81
504.0
M2_82
493.4
M2_83
489.0
M2_84
487.1
M2_85
482.6
M2_86
474.1
M2_87
450.9
M2_88
443.3
M2_89
440.8
M2_90
399.7
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