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FAM229B
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  • TISSUE

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  • FAM229B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:100.8 nTPM
HPA Brain:66.0 nTPM
GTEx:100.8 nTPM
FANTOM5:85.8 Scaled Tags Per Million
Pig:5.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 61.1
1981 Female, age 72, midline 81.7
2048 Male, age 55, midline 66.4
2565 Male, age 75, midline 55.2
2816 Male, age 47, midline 54.1
2194 Female, age 79, both hemispheres 48.0
Cervical spinal cord, dorsal horn
nTPM: 59.7
2173 Female, age 72, unknown 85.9
2296 Male, age 66, both hemispheres 74.9
2069 Male, age 47, both hemispheres 63.0
1877 Male, age 55, unknown 54.8
2297 Male, age 75, both hemispheres 41.2
2721 Male, age 90, both hemispheres 38.3
Cervical spinal cord, ventral horn
nTPM: 66.0
2098 Female, age 72, unknown 83.8
2480 Male, age 75, both hemispheres 80.2
2809 Male, age 90, both hemispheres 69.8
2295 Male, age 66, both hemispheres 67.4
2068 Male, age 55, unknown 52.4
2820 Female, age 79, both hemispheres 42.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.8
Samples: 204

Max nTPM: 184.5
Min nTPM: 41.5
Std nTPM: 27.8
Median nTPM: 99.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 184.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 181.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 167.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 159.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 158.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 158.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 157.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 156.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 155.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 152.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 151.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 151.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 149.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 148.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 145.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 141.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 139.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 137.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 135.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 134.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 133.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 133.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 133.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 133.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 132.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 130.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 129.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 129.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 128.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 128.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 127.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 126.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 126.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 126.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 124.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 123.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 123.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 123.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 122.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 122.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 121.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 119.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 119.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 118.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 118.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 118.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 118.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 117.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 117.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 117.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 116.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 116.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 115.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 115.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 115.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 114.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 114.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 114.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 112.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 111.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 111.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 111.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 111.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 109.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 109.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 108.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 108.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 108.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 107.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 107.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 107.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 107.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 105.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 105.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 105.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 105.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 104.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 104.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 104.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 103.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 102.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 102.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 102.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 101.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 100.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 100.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 100.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 99.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 99.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 99.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 99.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 98.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 98.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 98.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 97.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 97.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 96.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 96.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 96.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 96.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 96.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 95.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 95.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 95.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 95.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 94.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 94.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 94.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 93.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 93.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 93.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 92.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 92.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 92.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 92.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 91.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 91.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 90.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 90.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 90.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 89.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 89.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 89.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 87.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 87.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 86.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 86.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 84.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 83.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 83.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 83.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 82.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 82.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 82.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 80.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 80.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 79.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 79.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 79.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 77.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 77.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 76.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 76.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 75.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 75.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 75.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 74.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 73.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 72.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 71.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 71.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 71.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 71.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 70.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 70.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 69.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 69.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 68.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 66.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 65.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 65.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 63.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 63.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 61.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 61.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 59.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 53.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 52.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 50.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 49.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 45.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 41.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.8
FF:10181-103D1 60 years, female 90.0
FF:10159-103A6 76 years, female 81.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.8
Sample A Female 3.1
Sample B Female 4.7
Sample C Male 2.9
Sample D Male 2.8
Ventral spinal cord
nTPM: 5.1
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.1
Sample A Female 5.5
Sample B Female 6.3
Sample C Male 5.4
Sample D Male 3.1

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