A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
6.1
nTPM
Schmiedel:
59.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Memory B-cell nTPM: 0.8
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
2.7
P10809_1092
2.1
P10809_1105
0.0
Naive B-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1011
0.0
P10809_1029
0.6
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
0.0
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 3.2
Samples: 4
Max nTPM: 8.7
Min nTPM: 0.0
RHH5310_R3677
3.1
RHH5218_R3590
8.7
RHH5247_R3619
1.2
RHH5276_R3648
0.0
Naive B-cell nTPM: 6.1
Samples: 4
Max nTPM: 8.1
Min nTPM: 4.7
RHH5308_R3675
5.7
RHH5216_R3588
8.1
RHH5245_R3617
4.7
RHH5274_R3646
5.9
Non-switched memory B-cell nTPM: 5.7
Samples: 4
Max nTPM: 7.8
Min nTPM: 3.2
RHH5309_R3676
3.2
RHH5217_R3589
6.6
RHH5246_R3618
5.2
RHH5275_R3647
7.8
Plasmablast nTPM: 4.8
Samples: 4
Max nTPM: 10.8
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
10.8
RHH5249_R3621
0.0
RHH5278_R3650
8.4
Switched memory B-cell nTPM: 2.6
Samples: 4
Max nTPM: 8.2
Min nTPM: 0.0
RHH5311_R3678
2.0
RHH5219_R3591
0.1
RHH5248_R3620
0.0
RHH5277_R3649
8.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.7
Schmiedel sample id
TPM
Naive B-cell TPM: 59.7
Samples: 91
Max TPM: 87.2
Min TPM: 26.3
B_CELL_NAIVE_1
87.2
B_CELL_NAIVE_2
85.2
B_CELL_NAIVE_3
82.0
B_CELL_NAIVE_4
80.0
B_CELL_NAIVE_5
79.2
B_CELL_NAIVE_6
76.9
B_CELL_NAIVE_7
76.0
B_CELL_NAIVE_8
74.9
B_CELL_NAIVE_9
74.1
B_CELL_NAIVE_10
73.4
B_CELL_NAIVE_11
73.3
B_CELL_NAIVE_12
71.8
B_CELL_NAIVE_13
71.3
B_CELL_NAIVE_14
70.2
B_CELL_NAIVE_15
69.4
B_CELL_NAIVE_16
69.2
B_CELL_NAIVE_17
68.8
B_CELL_NAIVE_18
68.8
B_CELL_NAIVE_19
68.4
B_CELL_NAIVE_20
68.3
B_CELL_NAIVE_21
68.0
B_CELL_NAIVE_22
67.9
B_CELL_NAIVE_23
67.3
B_CELL_NAIVE_24
67.3
B_CELL_NAIVE_25
67.1
B_CELL_NAIVE_26
66.4
B_CELL_NAIVE_27
66.0
B_CELL_NAIVE_28
65.7
B_CELL_NAIVE_29
65.2
B_CELL_NAIVE_30
64.6
B_CELL_NAIVE_31
64.2
B_CELL_NAIVE_32
64.2
B_CELL_NAIVE_33
64.1
B_CELL_NAIVE_34
63.7
B_CELL_NAIVE_35
63.4
B_CELL_NAIVE_36
63.1
B_CELL_NAIVE_37
62.8
B_CELL_NAIVE_38
62.4
B_CELL_NAIVE_39
62.3
B_CELL_NAIVE_40
61.8
B_CELL_NAIVE_41
61.8
B_CELL_NAIVE_42
61.5
B_CELL_NAIVE_43
61.3
B_CELL_NAIVE_44
61.3
B_CELL_NAIVE_45
61.1
B_CELL_NAIVE_46
60.9
B_CELL_NAIVE_47
60.4
B_CELL_NAIVE_48
60.2
B_CELL_NAIVE_49
60.2
B_CELL_NAIVE_50
59.7
B_CELL_NAIVE_51
59.7
B_CELL_NAIVE_52
59.7
B_CELL_NAIVE_53
59.2
B_CELL_NAIVE_54
58.6
B_CELL_NAIVE_55
58.5
B_CELL_NAIVE_56
58.0
B_CELL_NAIVE_57
57.9
B_CELL_NAIVE_58
57.8
B_CELL_NAIVE_59
57.8
B_CELL_NAIVE_60
57.8
B_CELL_NAIVE_61
57.4
B_CELL_NAIVE_62
56.7
B_CELL_NAIVE_63
56.4
B_CELL_NAIVE_64
56.3
B_CELL_NAIVE_65
56.0
B_CELL_NAIVE_66
55.3
B_CELL_NAIVE_67
55.1
B_CELL_NAIVE_68
54.6
B_CELL_NAIVE_69
54.3
B_CELL_NAIVE_70
54.3
B_CELL_NAIVE_71
53.6
B_CELL_NAIVE_72
53.4
B_CELL_NAIVE_73
53.1
B_CELL_NAIVE_74
52.6
B_CELL_NAIVE_75
52.5
B_CELL_NAIVE_76
51.5
B_CELL_NAIVE_77
50.7
B_CELL_NAIVE_78
46.5
B_CELL_NAIVE_79
45.1
B_CELL_NAIVE_80
44.6
B_CELL_NAIVE_81
44.0
B_CELL_NAIVE_82
42.4
B_CELL_NAIVE_83
40.7
B_CELL_NAIVE_84
40.0
B_CELL_NAIVE_85
39.1
B_CELL_NAIVE_86
37.6
B_CELL_NAIVE_87
36.6
B_CELL_NAIVE_88
30.3
B_CELL_NAIVE_89
29.8
B_CELL_NAIVE_90
26.7
B_CELL_NAIVE_91
26.3
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