A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
1.1
nTPM
Schmiedel:
90.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
NK-cell nTPM: 0.5
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1013
0.4
P10809_1033
1.0
P10809_1052
0.5
P10809_1071
0.5
P10809_1093
0.0
P10809_1103
0.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
Monaco sample
nTPM
NK-cell nTPM: 1.1
Samples: 4
Max nTPM: 4.4
Min nTPM: 0.0
RHH5316_R3683
4.4
RHH5224_R3596
0.0
RHH5253_R3625
0.0
RHH5282_R3654
0.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.6
Schmiedel sample id
TPM
NK-cell TPM: 90.7
Samples: 90
Max TPM: 119.1
Min TPM: 50.4
NK_1
119.1
NK_2
118.1
NK_3
116.2
NK_4
115.7
NK_5
114.1
NK_6
113.6
NK_7
112.3
NK_8
111.3
NK_9
110.5
NK_10
109.9
NK_11
109.7
NK_12
109.6
NK_13
108.5
NK_14
108.4
NK_15
107.0
NK_16
106.7
NK_17
106.4
NK_18
106.3
NK_19
106.0
NK_20
104.7
NK_21
104.4
NK_22
103.8
NK_23
103.6
NK_24
103.3
NK_25
102.2
NK_26
99.0
NK_27
98.3
NK_28
97.9
NK_29
97.5
NK_30
97.4
NK_31
97.0
NK_32
96.8
NK_33
96.8
NK_34
96.5
NK_35
96.2
NK_36
95.2
NK_37
95.1
NK_38
94.7
NK_39
94.6
NK_40
94.3
NK_41
94.0
NK_42
93.8
NK_43
93.8
NK_44
93.1
NK_45
93.0
NK_46
92.6
NK_47
92.0
NK_48
91.9
NK_49
91.6
NK_50
91.5
NK_51
91.4
NK_52
91.3
NK_53
90.8
NK_54
90.4
NK_55
90.3
NK_56
89.9
NK_57
89.8
NK_58
88.9
NK_59
88.5
NK_60
88.0
NK_61
87.9
NK_62
87.7
NK_63
85.0
NK_64
83.8
NK_65
83.8
NK_66
83.1
NK_67
82.9
NK_68
81.4
NK_69
80.3
NK_70
77.4
NK_71
75.3
NK_72
75.1
NK_73
73.9
NK_74
73.1
NK_75
73.1
NK_76
72.5
NK_77
71.1
NK_78
71.0
NK_79
70.8
NK_80
68.8
NK_81
67.1
NK_82
66.7
NK_83
64.6
NK_84
62.7
NK_85
62.2
NK_86
62.0
NK_87
55.7
NK_88
51.9
NK_89
51.9
NK_90
50.4
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