A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
4.5
nTPM
Schmiedel:
63.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1003
0.7
P10809_1020
1.0
P10809_1039
1.1
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1004
1.1
P10809_1023
0.0
P10809_1042
0.1
P10809_1061
0.0
P10809_1081
0.0
P10809_1108
0.2
Non-classical monocyte nTPM: 0.5
Samples: 5
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1005
0.8
P10809_1053
0.9
P10809_1072
0.0
P10809_1082
1.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.5
Monaco sample
nTPM
Classical monocyte nTPM: 4.5
Samples: 4
Max nTPM: 7.2
Min nTPM: 0.0
RHH5313_R3680
6.5
RHH5221_R3593
7.2
RHH5250_R3622
0.0
RHH5279_R3651
4.4
Intermediate monocyte nTPM: 2.4
Samples: 4
Max nTPM: 9.6
Min nTPM: 0.0
RHH5314_R3681
0.0
RHH5222_R3594
0.0
RHH5251_R3623
0.0
RHH5280_R3652
9.6
Non-classical monocyte nTPM: 2.9
Samples: 4
Max nTPM: 5.2
Min nTPM: 0.0
RHH5315_R3682
5.2
RHH5223_R3595
1.9
RHH5252_R3624
0.0
RHH5281_R3653
4.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.0
Schmiedel sample id
TPM
Classical monocyte TPM: 63.0
Samples: 91
Max TPM: 77.8
Min TPM: 42.5
MONOCYTES_1
77.8
MONOCYTES_2
76.4
MONOCYTES_3
75.7
MONOCYTES_4
75.6
MONOCYTES_5
75.0
MONOCYTES_6
74.5
MONOCYTES_7
74.0
MONOCYTES_8
73.6
MONOCYTES_9
73.3
MONOCYTES_10
73.0
MONOCYTES_11
72.4
MONOCYTES_12
70.5
MONOCYTES_13
70.5
MONOCYTES_14
70.0
MONOCYTES_15
70.0
MONOCYTES_16
69.9
MONOCYTES_17
69.9
MONOCYTES_18
69.8
MONOCYTES_19
69.4
MONOCYTES_20
69.3
MONOCYTES_21
68.9
MONOCYTES_22
68.8
MONOCYTES_23
68.4
MONOCYTES_24
68.0
MONOCYTES_25
67.9
MONOCYTES_26
67.8
MONOCYTES_27
67.7
MONOCYTES_28
67.7
MONOCYTES_29
67.2
MONOCYTES_30
67.1
MONOCYTES_31
67.1
MONOCYTES_32
66.7
MONOCYTES_33
66.7
MONOCYTES_34
66.1
MONOCYTES_35
65.9
MONOCYTES_36
65.5
MONOCYTES_37
64.9
MONOCYTES_38
64.8
MONOCYTES_39
64.7
MONOCYTES_40
64.4
MONOCYTES_41
64.1
MONOCYTES_42
64.0
MONOCYTES_43
63.4
MONOCYTES_44
63.1
MONOCYTES_45
63.0
MONOCYTES_46
63.0
MONOCYTES_47
62.8
MONOCYTES_48
62.7
MONOCYTES_49
62.5
MONOCYTES_50
62.2
MONOCYTES_51
62.0
MONOCYTES_52
62.0
MONOCYTES_53
62.0
MONOCYTES_54
61.8
MONOCYTES_55
61.5
MONOCYTES_56
61.5
MONOCYTES_57
61.4
MONOCYTES_58
61.3
MONOCYTES_59
61.0
MONOCYTES_60
60.9
MONOCYTES_61
60.6
MONOCYTES_62
60.5
MONOCYTES_63
60.4
MONOCYTES_64
59.6
MONOCYTES_65
59.0
MONOCYTES_66
58.9
MONOCYTES_67
58.8
MONOCYTES_68
58.3
MONOCYTES_69
58.2
MONOCYTES_70
58.2
MONOCYTES_71
57.4
MONOCYTES_72
57.1
MONOCYTES_73
57.1
MONOCYTES_74
56.9
MONOCYTES_75
56.9
MONOCYTES_76
56.0
MONOCYTES_77
56.0
MONOCYTES_78
55.6
MONOCYTES_79
54.7
MONOCYTES_80
54.7
MONOCYTES_81
53.8
MONOCYTES_82
53.6
MONOCYTES_83
53.2
MONOCYTES_84
51.8
MONOCYTES_85
51.6
MONOCYTES_86
50.8
MONOCYTES_87
50.7
MONOCYTES_88
48.8
MONOCYTES_89
48.4
MONOCYTES_90
43.9
MONOCYTES_91
42.5
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Non-classical monocyte TPM: 54.6
Samples: 90
Max TPM: 76.0
Min TPM: 29.1
M2_1
76.0
M2_2
75.8
M2_3
75.1
M2_4
71.1
M2_5
70.5
M2_6
70.5
M2_7
70.3
M2_8
67.6
M2_9
67.4
M2_10
67.0
M2_11
65.6
M2_12
65.3
M2_13
65.0
M2_14
64.5
M2_15
64.1
M2_16
64.0
M2_17
63.8
M2_18
63.7
M2_19
63.2
M2_20
62.5
M2_21
62.0
M2_22
61.6
M2_23
61.6
M2_24
61.1
M2_25
61.1
M2_26
60.8
M2_27
60.7
M2_28
60.6
M2_29
60.6
M2_30
60.2
M2_31
59.8
M2_32
59.3
M2_33
59.1
M2_34
58.4
M2_35
58.4
M2_36
58.2
M2_37
58.1
M2_38
58.0
M2_39
57.9
M2_40
57.1
M2_41
56.5
M2_42
56.2
M2_43
56.0
M2_44
55.9
M2_45
55.3
M2_46
54.6
M2_47
54.4
M2_48
54.2
M2_49
53.7
M2_50
53.7
M2_51
53.5
M2_52
53.2
M2_53
52.7
M2_54
52.2
M2_55
52.2
M2_56
52.0
M2_57
51.9
M2_58
51.5
M2_59
51.3
M2_60
51.2
M2_61
51.1
M2_62
50.8
M2_63
50.1
M2_64
50.1
M2_65
49.1
M2_66
49.0
M2_67
48.9
M2_68
48.6
M2_69
48.3
M2_70
47.3
M2_71
47.1
M2_72
46.3
M2_73
45.8
M2_74
43.4
M2_75
43.2
M2_76
43.1
M2_77
42.2
M2_78
42.0
M2_79
41.9
M2_80
40.6
M2_81
40.5
M2_82
40.3
M2_83
39.2
M2_84
39.1
M2_85
38.5
M2_86
38.2
M2_87
38.1
M2_88
32.5
M2_89
32.2
M2_90
29.1
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