A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
0.0
nTPM
Schmiedel:
83.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Memory B-cell nTPM: 1.0
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.0
P10809_1017
0.6
P10809_1025
2.0
P10809_1044
2.3
P10809_1063
1.2
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1011
0.5
P10809_1029
0.9
P10809_1048
0.0
P10809_1067
0.3
P10809_1091
0.0
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5310_R3677
0.0
RHH5218_R3590
0.0
RHH5247_R3619
0.0
RHH5276_R3648
0.0
Naive B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5308_R3675
0.0
RHH5216_R3588
0.0
RHH5245_R3617
0.0
RHH5274_R3646
0.0
Non-switched memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5309_R3676
0.0
RHH5217_R3589
0.0
RHH5246_R3618
0.0
RHH5275_R3647
0.0
Plasmablast nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
0.0
RHH5248_R3620
0.0
RHH5277_R3649
0.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.8
Schmiedel sample id
TPM
Naive B-cell TPM: 83.8
Samples: 91
Max TPM: 108.1
Min TPM: 36.0
B_CELL_NAIVE_1
108.1
B_CELL_NAIVE_2
106.3
B_CELL_NAIVE_3
105.7
B_CELL_NAIVE_4
101.7
B_CELL_NAIVE_5
100.3
B_CELL_NAIVE_6
99.3
B_CELL_NAIVE_7
99.1
B_CELL_NAIVE_8
98.9
B_CELL_NAIVE_9
98.8
B_CELL_NAIVE_10
97.6
B_CELL_NAIVE_11
97.6
B_CELL_NAIVE_12
97.4
B_CELL_NAIVE_13
97.2
B_CELL_NAIVE_14
96.8
B_CELL_NAIVE_15
96.6
B_CELL_NAIVE_16
96.6
B_CELL_NAIVE_17
96.5
B_CELL_NAIVE_18
96.1
B_CELL_NAIVE_19
96.0
B_CELL_NAIVE_20
95.9
B_CELL_NAIVE_21
95.3
B_CELL_NAIVE_22
94.9
B_CELL_NAIVE_23
94.5
B_CELL_NAIVE_24
94.1
B_CELL_NAIVE_25
93.8
B_CELL_NAIVE_26
93.6
B_CELL_NAIVE_27
93.6
B_CELL_NAIVE_28
93.4
B_CELL_NAIVE_29
93.1
B_CELL_NAIVE_30
92.4
B_CELL_NAIVE_31
91.9
B_CELL_NAIVE_32
91.6
B_CELL_NAIVE_33
90.2
B_CELL_NAIVE_34
90.1
B_CELL_NAIVE_35
90.1
B_CELL_NAIVE_36
89.9
B_CELL_NAIVE_37
89.4
B_CELL_NAIVE_38
89.4
B_CELL_NAIVE_39
89.4
B_CELL_NAIVE_40
89.4
B_CELL_NAIVE_41
89.1
B_CELL_NAIVE_42
88.8
B_CELL_NAIVE_43
88.6
B_CELL_NAIVE_44
88.6
B_CELL_NAIVE_45
88.5
B_CELL_NAIVE_46
87.6
B_CELL_NAIVE_47
87.6
B_CELL_NAIVE_48
86.8
B_CELL_NAIVE_49
85.5
B_CELL_NAIVE_50
85.3
B_CELL_NAIVE_51
85.3
B_CELL_NAIVE_52
85.2
B_CELL_NAIVE_53
85.0
B_CELL_NAIVE_54
84.9
B_CELL_NAIVE_55
84.6
B_CELL_NAIVE_56
84.2
B_CELL_NAIVE_57
83.8
B_CELL_NAIVE_58
83.6
B_CELL_NAIVE_59
83.3
B_CELL_NAIVE_60
83.3
B_CELL_NAIVE_61
82.8
B_CELL_NAIVE_62
82.7
B_CELL_NAIVE_63
82.2
B_CELL_NAIVE_64
81.9
B_CELL_NAIVE_65
81.6
B_CELL_NAIVE_66
79.9
B_CELL_NAIVE_67
79.2
B_CELL_NAIVE_68
79.2
B_CELL_NAIVE_69
78.8
B_CELL_NAIVE_70
78.6
B_CELL_NAIVE_71
75.0
B_CELL_NAIVE_72
74.8
B_CELL_NAIVE_73
74.8
B_CELL_NAIVE_74
74.3
B_CELL_NAIVE_75
70.4
B_CELL_NAIVE_76
69.0
B_CELL_NAIVE_77
68.9
B_CELL_NAIVE_78
68.9
B_CELL_NAIVE_79
68.8
B_CELL_NAIVE_80
68.1
B_CELL_NAIVE_81
62.2
B_CELL_NAIVE_82
61.2
B_CELL_NAIVE_83
58.8
B_CELL_NAIVE_84
58.1
B_CELL_NAIVE_85
57.8
B_CELL_NAIVE_86
52.3
B_CELL_NAIVE_87
50.3
B_CELL_NAIVE_88
48.5
B_CELL_NAIVE_89
43.4
B_CELL_NAIVE_90
38.0
B_CELL_NAIVE_91
36.0
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The Human Protein Atlas project is funded
