A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
0.0
nTPM
Schmiedel:
74.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1003
0.5
P10809_1020
0.4
P10809_1039
0.7
P10809_1058
0.6
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1004
0.6
P10809_1023
0.9
P10809_1042
0.6
P10809_1061
0.0
P10809_1081
0.0
P10809_1108
0.0
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1005
1.2
P10809_1053
2.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
Monaco sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
0.0
RHH5250_R3622
0.0
RHH5279_R3651
0.0
Intermediate monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5314_R3681
0.0
RHH5222_R3594
0.0
RHH5251_R3623
0.0
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
0.0
RHH5252_R3624
0.0
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.5
Schmiedel sample id
TPM
Classical monocyte TPM: 50.8
Samples: 91
Max TPM: 69.0
Min TPM: 33.6
MONOCYTES_1
69.0
MONOCYTES_2
67.0
MONOCYTES_3
64.9
MONOCYTES_4
61.4
MONOCYTES_5
60.2
MONOCYTES_6
59.5
MONOCYTES_7
59.4
MONOCYTES_8
59.2
MONOCYTES_9
59.0
MONOCYTES_10
59.0
MONOCYTES_11
58.9
MONOCYTES_12
58.2
MONOCYTES_13
58.1
MONOCYTES_14
58.1
MONOCYTES_15
57.7
MONOCYTES_16
57.6
MONOCYTES_17
56.9
MONOCYTES_18
56.3
MONOCYTES_19
56.0
MONOCYTES_20
55.8
MONOCYTES_21
55.5
MONOCYTES_22
55.5
MONOCYTES_23
55.5
MONOCYTES_24
54.8
MONOCYTES_25
54.4
MONOCYTES_26
54.4
MONOCYTES_27
53.9
MONOCYTES_28
53.6
MONOCYTES_29
53.4
MONOCYTES_30
53.4
MONOCYTES_31
53.3
MONOCYTES_32
53.1
MONOCYTES_33
52.8
MONOCYTES_34
52.8
MONOCYTES_35
52.6
MONOCYTES_36
52.6
MONOCYTES_37
52.3
MONOCYTES_38
52.2
MONOCYTES_39
52.0
MONOCYTES_40
51.9
MONOCYTES_41
51.8
MONOCYTES_42
51.2
MONOCYTES_43
51.1
MONOCYTES_44
51.0
MONOCYTES_45
50.4
MONOCYTES_46
50.4
MONOCYTES_47
50.0
MONOCYTES_48
50.0
MONOCYTES_49
49.9
MONOCYTES_50
49.6
MONOCYTES_51
49.5
MONOCYTES_52
49.3
MONOCYTES_53
49.2
MONOCYTES_54
49.1
MONOCYTES_55
49.0
MONOCYTES_56
48.9
MONOCYTES_57
48.8
MONOCYTES_58
48.6
MONOCYTES_59
48.5
MONOCYTES_60
48.4
MONOCYTES_61
48.4
MONOCYTES_62
48.4
MONOCYTES_63
48.2
MONOCYTES_64
47.9
MONOCYTES_65
47.9
MONOCYTES_66
47.8
MONOCYTES_67
47.8
MONOCYTES_68
47.7
MONOCYTES_69
47.7
MONOCYTES_70
47.6
MONOCYTES_71
47.5
MONOCYTES_72
47.4
MONOCYTES_73
46.4
MONOCYTES_74
45.9
MONOCYTES_75
45.6
MONOCYTES_76
44.5
MONOCYTES_77
44.4
MONOCYTES_78
44.3
MONOCYTES_79
43.7
MONOCYTES_80
43.2
MONOCYTES_81
43.1
MONOCYTES_82
42.6
MONOCYTES_83
42.5
MONOCYTES_84
41.2
MONOCYTES_85
40.8
MONOCYTES_86
40.0
MONOCYTES_87
39.6
MONOCYTES_88
39.2
MONOCYTES_89
39.0
MONOCYTES_90
34.3
MONOCYTES_91
33.6
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Non-classical monocyte TPM: 74.5
Samples: 90
Max TPM: 91.4
Min TPM: 47.1
M2_1
91.4
M2_2
90.3
M2_3
89.5
M2_4
89.0
M2_5
88.6
M2_6
88.0
M2_7
87.6
M2_8
86.9
M2_9
86.5
M2_10
86.5
M2_11
86.4
M2_12
85.4
M2_13
85.4
M2_14
84.9
M2_15
84.8
M2_16
83.8
M2_17
83.7
M2_18
82.8
M2_19
82.7
M2_20
82.4
M2_21
82.2
M2_22
82.1
M2_23
82.0
M2_24
81.3
M2_25
81.3
M2_26
80.7
M2_27
80.3
M2_28
80.1
M2_29
79.8
M2_30
79.7
M2_31
79.5
M2_32
79.1
M2_33
79.1
M2_34
78.8
M2_35
78.5
M2_36
78.1
M2_37
77.8
M2_38
77.8
M2_39
77.8
M2_40
77.7
M2_41
77.7
M2_42
77.6
M2_43
77.3
M2_44
77.2
M2_45
76.4
M2_46
76.4
M2_47
76.2
M2_48
75.6
M2_49
75.3
M2_50
75.2
M2_51
74.4
M2_52
74.2
M2_53
74.1
M2_54
73.6
M2_55
73.4
M2_56
73.4
M2_57
73.3
M2_58
73.1
M2_59
72.2
M2_60
71.8
M2_61
71.8
M2_62
71.7
M2_63
71.4
M2_64
71.0
M2_65
70.5
M2_66
70.4
M2_67
69.8
M2_68
69.3
M2_69
68.7
M2_70
67.9
M2_71
67.8
M2_72
65.3
M2_73
65.1
M2_74
63.9
M2_75
63.2
M2_76
62.4
M2_77
62.3
M2_78
61.8
M2_79
61.4
M2_80
60.9
M2_81
60.7
M2_82
60.3
M2_83
58.8
M2_84
58.2
M2_85
56.1
M2_86
54.0
M2_87
53.7
M2_88
50.6
M2_89
48.3
M2_90
47.1
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