A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
0.0
nTPM
Schmiedel:
119.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
NK-cell nTPM: 0.9
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.0
P10809_1013
1.7
P10809_1033
0.8
P10809_1052
0.6
P10809_1071
2.2
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
Monaco sample
nTPM
NK-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5316_R3683
0.0
RHH5224_R3596
0.0
RHH5253_R3625
0.0
RHH5282_R3654
0.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.6
Schmiedel sample id
TPM
NK-cell TPM: 119.6
Samples: 90
Max TPM: 154.2
Min TPM: 74.2
NK_1
154.2
NK_2
149.7
NK_3
146.6
NK_4
146.4
NK_5
144.3
NK_6
141.6
NK_7
140.1
NK_8
137.8
NK_9
135.6
NK_10
135.3
NK_11
134.5
NK_12
134.0
NK_13
133.5
NK_14
133.3
NK_15
133.3
NK_16
133.1
NK_17
132.9
NK_18
132.1
NK_19
131.8
NK_20
131.5
NK_21
131.4
NK_22
130.8
NK_23
130.8
NK_24
129.9
NK_25
129.1
NK_26
128.8
NK_27
128.4
NK_28
128.1
NK_29
128.1
NK_30
128.0
NK_31
127.8
NK_32
127.6
NK_33
127.3
NK_34
127.3
NK_35
127.0
NK_36
126.5
NK_37
126.3
NK_38
126.3
NK_39
126.0
NK_40
125.9
NK_41
125.7
NK_42
125.0
NK_43
124.5
NK_44
124.1
NK_45
124.1
NK_46
123.8
NK_47
123.7
NK_48
123.2
NK_49
123.2
NK_50
123.1
NK_51
123.0
NK_52
122.6
NK_53
122.2
NK_54
121.5
NK_55
121.2
NK_56
119.3
NK_57
118.6
NK_58
118.4
NK_59
116.7
NK_60
116.3
NK_61
114.8
NK_62
113.8
NK_63
113.7
NK_64
113.6
NK_65
113.2
NK_66
113.0
NK_67
112.6
NK_68
111.6
NK_69
111.4
NK_70
105.8
NK_71
105.6
NK_72
104.7
NK_73
104.4
NK_74
103.9
NK_75
103.8
NK_76
101.8
NK_77
98.7
NK_78
98.3
NK_79
98.3
NK_80
96.6
NK_81
96.2
NK_82
96.1
NK_83
96.0
NK_84
88.9
NK_85
88.4
NK_86
87.8
NK_87
80.9
NK_88
77.6
NK_89
74.8
NK_90
74.2
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