A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
64.9
nTPM
Monaco:
64.1
nTPM
Schmiedel:
21.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.9
HPA sample
nTPM
Memory B-cell nTPM: 64.9
Samples: 6
Max nTPM: 102.2
Min nTPM: 47.0
P10809_1017
67.1
P10809_1025
102.2
P10809_1044
65.6
P10809_1063
52.1
P10809_1092
47.0
P10809_1105
55.1
Naive B-cell nTPM: 56.4
Samples: 6
Max nTPM: 84.1
Min nTPM: 47.0
P10809_1011
49.8
P10809_1029
84.1
P10809_1048
55.2
P10809_1067
50.7
P10809_1091
51.7
P10809_1104
47.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 50.4
Samples: 4
Max nTPM: 61.8
Min nTPM: 39.7
RHH5310_R3677
58.7
RHH5218_R3590
41.4
RHH5247_R3619
61.8
RHH5276_R3648
39.7
Naive B-cell nTPM: 46.3
Samples: 4
Max nTPM: 65.4
Min nTPM: 17.1
RHH5308_R3675
59.5
RHH5216_R3588
65.4
RHH5245_R3617
17.1
RHH5274_R3646
43.0
Non-switched memory B-cell nTPM: 55.4
Samples: 4
Max nTPM: 73.1
Min nTPM: 33.0
RHH5309_R3676
73.1
RHH5217_R3589
58.8
RHH5246_R3618
56.7
RHH5275_R3647
33.0
Plasmablast nTPM: 63.3
Samples: 4
Max nTPM: 76.6
Min nTPM: 50.3
RHH5312_R3679
55.3
RHH5220_R3592
70.8
RHH5249_R3621
76.6
RHH5278_R3650
50.3
Switched memory B-cell nTPM: 64.1
Samples: 4
Max nTPM: 99.2
Min nTPM: 36.8
RHH5311_R3678
99.2
RHH5219_R3591
72.3
RHH5248_R3620
48.2
RHH5277_R3649
36.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.2
Schmiedel sample id
TPM
Naive B-cell TPM: 21.2
Samples: 91
Max TPM: 42.3
Min TPM: 11.1
B_CELL_NAIVE_1
42.3
B_CELL_NAIVE_2
35.2
B_CELL_NAIVE_3
33.7
B_CELL_NAIVE_4
33.6
B_CELL_NAIVE_5
33.1
B_CELL_NAIVE_6
32.7
B_CELL_NAIVE_7
32.1
B_CELL_NAIVE_8
30.7
B_CELL_NAIVE_9
30.5
B_CELL_NAIVE_10
30.0
B_CELL_NAIVE_11
29.6
B_CELL_NAIVE_12
29.0
B_CELL_NAIVE_13
28.6
B_CELL_NAIVE_14
27.9
B_CELL_NAIVE_15
27.6
B_CELL_NAIVE_16
27.5
B_CELL_NAIVE_17
27.3
B_CELL_NAIVE_18
27.3
B_CELL_NAIVE_19
26.2
B_CELL_NAIVE_20
25.9
B_CELL_NAIVE_21
25.9
B_CELL_NAIVE_22
25.2
B_CELL_NAIVE_23
25.0
B_CELL_NAIVE_24
24.6
B_CELL_NAIVE_25
24.3
B_CELL_NAIVE_26
24.2
B_CELL_NAIVE_27
23.8
B_CELL_NAIVE_28
23.3
B_CELL_NAIVE_29
23.1
B_CELL_NAIVE_30
22.9
B_CELL_NAIVE_31
22.4
B_CELL_NAIVE_32
22.1
B_CELL_NAIVE_33
22.0
B_CELL_NAIVE_34
21.7
B_CELL_NAIVE_35
21.5
B_CELL_NAIVE_36
21.4
B_CELL_NAIVE_37
21.4
B_CELL_NAIVE_38
21.2
B_CELL_NAIVE_39
21.1
B_CELL_NAIVE_40
20.8
B_CELL_NAIVE_41
20.7
B_CELL_NAIVE_42
20.6
B_CELL_NAIVE_43
20.4
B_CELL_NAIVE_44
20.1
B_CELL_NAIVE_45
20.0
B_CELL_NAIVE_46
20.0
B_CELL_NAIVE_47
19.9
B_CELL_NAIVE_48
19.9
B_CELL_NAIVE_49
19.9
B_CELL_NAIVE_50
19.8
B_CELL_NAIVE_51
19.4
B_CELL_NAIVE_52
19.3
B_CELL_NAIVE_53
18.9
B_CELL_NAIVE_54
18.8
B_CELL_NAIVE_55
18.5
B_CELL_NAIVE_56
18.4
B_CELL_NAIVE_57
18.4
B_CELL_NAIVE_58
18.2
B_CELL_NAIVE_59
17.9
B_CELL_NAIVE_60
17.9
B_CELL_NAIVE_61
17.8
B_CELL_NAIVE_62
17.8
B_CELL_NAIVE_63
17.7
B_CELL_NAIVE_64
17.1
B_CELL_NAIVE_65
17.0
B_CELL_NAIVE_66
16.9
B_CELL_NAIVE_67
16.9
B_CELL_NAIVE_68
16.7
B_CELL_NAIVE_69
16.7
B_CELL_NAIVE_70
16.6
B_CELL_NAIVE_71
16.6
B_CELL_NAIVE_72
16.4
B_CELL_NAIVE_73
16.2
B_CELL_NAIVE_74
16.1
B_CELL_NAIVE_75
15.9
B_CELL_NAIVE_76
15.8
B_CELL_NAIVE_77
15.7
B_CELL_NAIVE_78
15.6
B_CELL_NAIVE_79
14.9
B_CELL_NAIVE_80
14.5
B_CELL_NAIVE_81
14.0
B_CELL_NAIVE_82
13.8
B_CELL_NAIVE_83
13.8
B_CELL_NAIVE_84
13.4
B_CELL_NAIVE_85
13.3
B_CELL_NAIVE_86
13.2
B_CELL_NAIVE_87
13.1
B_CELL_NAIVE_88
12.2
B_CELL_NAIVE_89
12.1
B_CELL_NAIVE_90
11.6
B_CELL_NAIVE_91
11.1
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The Human Protein Atlas project is funded
