A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
79.8
nTPM
Monaco:
48.0
nTPM
Schmiedel:
79.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.8
HPA sample
nTPM
NK-cell nTPM: 79.8
Samples: 6
Max nTPM: 135.6
Min nTPM: 62.1
P10809_1013
68.3
P10809_1033
135.6
P10809_1052
69.7
P10809_1071
75.8
P10809_1093
62.1
P10809_1103
67.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.0
Monaco sample
nTPM
NK-cell nTPM: 48.0
Samples: 4
Max nTPM: 62.1
Min nTPM: 27.8
RHH5316_R3683
62.1
RHH5224_R3596
53.0
RHH5253_R3625
27.8
RHH5282_R3654
49.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.0
Schmiedel sample id
TPM
NK-cell TPM: 79.0
Samples: 90
Max TPM: 113.2
Min TPM: 56.7
NK_1
113.2
NK_2
107.3
NK_3
106.5
NK_4
102.9
NK_5
102.2
NK_6
98.2
NK_7
97.6
NK_8
97.2
NK_9
95.9
NK_10
95.5
NK_11
92.1
NK_12
91.1
NK_13
90.5
NK_14
90.2
NK_15
89.3
NK_16
89.2
NK_17
87.7
NK_18
87.2
NK_19
86.8
NK_20
86.6
NK_21
86.0
NK_22
85.3
NK_23
84.8
NK_24
84.2
NK_25
83.9
NK_26
83.8
NK_27
83.7
NK_28
83.3
NK_29
83.3
NK_30
83.1
NK_31
82.9
NK_32
82.0
NK_33
81.7
NK_34
81.6
NK_35
81.3
NK_36
81.2
NK_37
81.0
NK_38
80.8
NK_39
80.8
NK_40
80.8
NK_41
80.7
NK_42
80.2
NK_43
78.9
NK_44
78.7
NK_45
78.7
NK_46
78.6
NK_47
78.5
NK_48
77.0
NK_49
76.9
NK_50
76.9
NK_51
76.6
NK_52
76.2
NK_53
75.4
NK_54
74.9
NK_55
74.7
NK_56
74.3
NK_57
74.0
NK_58
73.8
NK_59
73.5
NK_60
73.5
NK_61
73.3
NK_62
73.1
NK_63
73.0
NK_64
72.6
NK_65
72.4
NK_66
72.0
NK_67
72.0
NK_68
71.4
NK_69
70.9
NK_70
70.7
NK_71
70.6
NK_72
70.5
NK_73
69.0
NK_74
68.9
NK_75
68.6
NK_76
68.6
NK_77
68.2
NK_78
67.4
NK_79
67.4
NK_80
66.4
NK_81
65.5
NK_82
63.5
NK_83
62.5
NK_84
61.9
NK_85
61.7
NK_86
61.5
NK_87
59.9
NK_88
59.8
NK_89
58.7
NK_90
56.7
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