MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:143.2 nTPM
HPA Brain:148.1 nTPM
GTEx:143.2 nTPM
FANTOM5:325.7 Scaled Tags Per Million
Pig:140.8 nTPM
Mouse:62.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.6
2586 Male, age 75, left hemisphere 174.6
1870 Female, age 42, unknown 172.1
2828 Female, age 72, unknown 164.7
1830 Male, age 51, unknown 137.5
1833 Male, age 53, unknown 128.9
2411 Female, age 72, unknown 114.1
1827 Male, age 72, unknown 107.3
2666 Male, age 74, left hemisphere 105.1
2019 Male, age 18, unknown 90.2
2219 Male, age 76, both hemispheres 61.1
Dorsal raphe nucleus
nTPM: 113.2
2016 Female, age 72, unknown 130.1
2750 Male, age 76, both hemispheres 124.7
1828 Male, age 53, unknown 120.5
2298 Female, age 72, unknown 97.4
2047 Male, age 72, unknown 93.4
Inferior colliculus
nTPM: 92.9
2849 Male, age 72, unknown 111.1
1848 Female, age 42, unknown 95.9
1890 Male, age 53, unknown 91.9
2097 Female, age 72, unknown 72.7
Median raphe nucleus
nTPM: 84.5
2220 Male, age 76, midline 84.5
Periaquaductal grey, anterior
nTPM: 105.6
1947 Male, age 18, unknown 108.5
2502 Female, age 75, unknown 104.8
1795 Male, age 51, unknown 103.4
Periaquaductal grey, dorsal
nTPM: 107.0
1831 Male, age 72, unknown 124.4
2850 Male, age 76, both hemispheres 120.9
2464 Female, age 72, unknown 96.0
1840 Male, age 53, unknown 86.9
Periaquaductal grey, lateral
nTPM: 136.3
2272 Male, age 74, both hemispheres 154.1
2053 Male, age 18, unknown 141.8
2140 Male, age 76, both hemispheres 113.0
Pretectal area
nTPM: 111.4
2273 Male, age 74, both hemispheres 168.6
2825 Male, age 18, unknown 141.8
2407 Male, age 75, both hemispheres 131.6
2667 Female, age 75, unknown 130.5
2316 Male, age 76, right hemisphere 122.6
1815 Male, age 53, unknown 116.1
2224 Female, age 72, unknown 105.0
1817 Female, age 42, unknown 96.7
2007 Male, age 72, unknown 77.1
1944 Female, age 72, unknown 69.4
1816 Male, age 51, unknown 65.6
Red nucleus
nTPM: 148.1
2823 Male, age 76, right hemisphere 171.8
1821 Female, age 72, unknown 171.5
1865 Male, age 51, unknown 171.2
2769 Male, age 72, unknown 163.2
1954 Female, age 42, unknown 156.9
2227 Male, age 72, unknown 155.0
1904 Male, age 53, unknown 153.4
2503 Female, age 72, unknown 148.8
2725 Female, age 75, unknown 138.7
2584 Male, age 75, left hemisphere 124.9
2785 Male, age 18, unknown 120.7
2588 Male, age 74, left hemisphere 101.4
Substantia nigra
nTPM: 104.2
2699 Male, age 18, unknown 142.4
2583 Male, age 75, right hemisphere 125.9
1851 Male, age 51, unknown 123.8
2590 Female, age 75, unknown 110.7
1916 Female, age 42, unknown 100.0
1889 Female, age 72, unknown 96.1
2409 Female, age 72, unknown 91.1
1941 Male, age 53, unknown 89.2
2665 Male, age 74, both hemispheres 86.2
2241 Male, age 72, unknown 76.4
Superior colliculus
nTPM: 120.9
2664 Male, age 75, both hemispheres 181.6
1995 Male, age 72, unknown 172.5
1913 Female, age 42, unknown 161.0
1839 Male, age 51, unknown 129.6
1796 Male, age 53, unknown 109.7
2261 Male, age 18, unknown 94.2
1895 Male, age 76, right hemisphere 93.9
2668 Female, age 75, unknown 93.5
2587 Male, age 74, left hemisphere 93.3
2087 Female, age 72, unknown 80.0
Ventral tegmental area
nTPM: 117.6
2223 Female, age 72, unknown 180.1
2021 Male, age 53, unknown 128.7
1915 Female, age 42, unknown 111.7
1942 Male, age 51, unknown 105.0
2218 Male, age 76, both hemispheres 92.3
2410 Female, age 72, unknown 87.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 143.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 143.2
Samples: 183

Max nTPM: 346.3
Min nTPM: 29.9
Std nTPM: 55.4
Median nTPM: 131.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 346.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 331.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 310.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 303.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 302.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 285.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 279.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 278.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 277.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 270.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 254.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 325.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 325.7
FF:10158-103A5 76 years, female 325.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 140.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.3
Samples: 4

Max nTPM: 148.5
Min nTPM: 98.0
Sample A Female 118.4
Sample B Female 98.0
Sample C Male 124.1
Sample D Male 148.5
Midbrain
nTPM: 140.8
Samples: 4

Max nTPM: 247.9
Min nTPM: 87.9
Sample A Female 247.9
Sample B Female 98.1
Sample C Male 129.2
Sample D Male 87.9
Periaqueductal gray
nTPM: 126.5
Samples: 3

Max nTPM: 136.9
Min nTPM: 117.7
Sample B Female 117.7
Sample C Male 136.9
Sample D Male 124.8
Superior colliculi
nTPM: 111.7
Samples: 4

Max nTPM: 135.1
Min nTPM: 87.1
Sample A Female 104.4
Sample B Female 87.1
Sample C Male 135.1
Sample D Male 120.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 69.5
Min nTPM: 57.9
Sample A Male 64.3
Sample B Male 57.9
Sample C Female 59.5
Sample D Female 69.5

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