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  • TISSUE

  • BRAIN

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  • DDR1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:167.5 nTPM
HPA Brain:133.7 nTPM
GTEx:167.5 nTPM
FANTOM5:272.5 Scaled Tags Per Million
Pig:174.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 133.7
2565 Male, age 75, midline 159.3
2816 Male, age 47, midline 143.5
1981 Female, age 72, midline 129.2
2048 Male, age 55, midline 122.6
2194 Female, age 79, both hemispheres 113.6
Cervical spinal cord, dorsal horn
nTPM: 118.7
2173 Female, age 72, unknown 178.7
2296 Male, age 66, both hemispheres 147.6
2721 Male, age 90, both hemispheres 111.7
1877 Male, age 55, unknown 109.6
2069 Male, age 47, both hemispheres 91.6
2297 Male, age 75, both hemispheres 73.2
Cervical spinal cord, ventral horn
nTPM: 124.0
2098 Female, age 72, unknown 162.1
2809 Male, age 90, both hemispheres 142.4
2820 Female, age 79, both hemispheres 121.7
2068 Male, age 55, unknown 115.6
2295 Male, age 66, both hemispheres 101.2
2480 Male, age 75, both hemispheres 101.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 167.5
Samples: 204

Max nTPM: 312.7
Min nTPM: 58.8
Std nTPM: 46.7
Median nTPM: 168.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 312.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 303.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 291.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 285.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 273.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 273.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 255.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 255.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 251.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 251.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 249.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 242.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 239.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 238.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 236.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 235.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 225.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 223.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 221.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 221.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 218.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 217.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 216.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 215.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 214.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 214.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 213.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 212.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 211.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 211.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 211.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 211.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 211.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 211.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 210.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 210.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 208.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 207.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 206.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 206.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 205.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 205.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 203.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 202.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 201.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 201.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 199.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 199.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 198.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 198.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 198.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 196.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 196.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 195.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 195.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 194.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 194.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 193.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 192.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 192.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 192.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 191.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 188.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 187.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 187.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 187.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 186.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 185.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 185.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 184.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 184.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 183.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 182.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 182.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 182.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 181.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 181.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 180.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 180.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 179.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 178.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 177.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 177.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 176.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 176.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 175.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 174.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 174.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 173.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 172.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 171.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 170.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 170.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 169.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 168.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 168.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 168.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 168.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 167.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 167.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 166.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 165.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 165.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 165.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 164.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 162.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 162.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 161.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 161.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 160.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 160.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 159.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 159.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 158.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 157.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 157.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 156.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 156.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 155.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 153.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 153.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 153.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 153.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 152.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 152.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 150.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 148.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 148.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 146.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 146.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 146.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 146.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 145.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 145.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 142.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 142.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 141.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 140.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 140.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 139.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 139.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 138.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 136.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 136.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 135.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 135.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 132.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 132.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 132.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 131.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 128.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 126.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 126.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 125.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 124.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 123.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 121.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 120.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 118.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 117.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 116.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 116.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 113.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 113.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 112.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 110.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 109.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 106.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 106.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 104.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 104.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 104.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 100.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 99.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 98.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 93.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 89.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 88.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 87.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 82.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 75.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 71.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 70.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 59.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 272.5
FF:10181-103D1 60 years, female 338.4
FF:10159-103A6 76 years, female 206.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 142.5
Samples: 4

Max nTPM: 144.3
Min nTPM: 140.7
Sample A Female 141.4
Sample B Female 140.7
Sample C Male 143.4
Sample D Male 144.3
Ventral spinal cord
nTPM: 174.9
Samples: 4

Max nTPM: 177.0
Min nTPM: 169.1
Sample A Female 176.8
Sample B Female 169.1
Sample C Male 176.8
Sample D Male 177.0

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