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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:385.9 nTPM
HPA Brain:252.4 nTPM
GTEx:385.9 nTPM
FANTOM5:510.8 Scaled Tags Per Million
Pig:135.2 nTPM
Mouse:274.1 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.4
Sample id Sample description nTPM
Amygdala
nTPM: 252.4
2695 Female, age 67, right hemisphere 306.7
2514 Male, age 75, right hemisphere 260.6
1987 Female, age 91, left hemisphere 238.9
2814 Male, age 76, right hemisphere 228.5
2517 Female, age 94, left hemisphere 227.4
Basal amygdala
nTPM: 217.4
2827 Female, age 67, right hemisphere 278.0
2609 Male, age 75, right hemisphere 249.3
2110 Male, age 80, left hemisphere 215.4
2685 Female, age 94, left hemisphere 197.3
2243 Female, age 91, right hemisphere 186.5
1955 Male, age 76, both hemispheres 177.8
Central amygdala
nTPM: 249.2
2826 Female, age 94, left hemisphere 330.1
2515 Male, age 75, right hemisphere 275.1
1905 Male, age 76, both hemispheres 232.8
2239 Male, age 80, left hemisphere 213.2
2701 Female, age 91, right hemisphere 194.8
Corticomedial amygdala
nTPM: 213.9
2428 Male, age 75, right hemisphere 267.3
2535 Female, age 67, right hemisphere 234.8
2242 Female, age 91, right hemisphere 217.1
2829 Male, age 80, left hemisphere 204.3
2429 Female, age 94, left hemisphere 180.7
2240 Male, age 76, both hemispheres 179.3
Lateral amygdala
nTPM: 243.9
2830 Female, age 67, right hemisphere 327.8
2516 Male, age 75, right hemisphere 259.5
2534 Female, age 94, left hemisphere 246.4
2256 Male, age 80, left hemisphere 228.9
2255 Female, age 91, right hemisphere 201.0
1883 Male, age 76, both hemispheres 199.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 385.9
Samples: 181

Max nTPM: 731.6
Min nTPM: 228.6
Std nTPM: 89.8
Median nTPM: 370.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 731.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 641.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 628.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 624.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 617.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 603.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 587.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 578.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 573.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 566.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 558.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 546.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 542.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 535.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 533.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 520.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 517.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 511.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 507.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 507.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 506.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 498.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 492.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 490.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 488.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 488.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 483.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 478.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 477.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 475.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 475.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 473.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 471.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 463.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 462.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 456.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 454.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 448.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 447.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 446.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 441.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 435.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 433.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 430.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 428.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 425.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 423.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 419.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 419.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 418.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 417.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 413.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 412.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 412.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 411.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 409.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 409.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 408.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 405.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 405.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 401.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 399.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 396.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 394.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 393.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 392.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 389.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 388.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 386.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 385.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 383.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 381.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 379.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 379.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 379.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 378.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 377.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 376.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 375.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 375.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 374.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 374.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 373.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 372.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 372.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 372.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 372.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 371.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 371.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 371.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 370.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 370.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 370.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 369.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 368.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 368.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 366.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 365.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 362.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 362.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 360.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 359.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 358.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 357.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 356.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 354.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 353.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 353.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 352.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 352.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 351.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 350.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 349.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 349.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 348.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 348.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 347.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 347.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 347.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 345.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 342.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 342.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 341.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 341.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 341.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 341.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 341.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 340.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 340.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 337.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 336.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 336.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 334.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 333.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 332.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 332.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 329.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 328.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 324.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 321.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 320.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 318.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 317.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 315.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 314.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 314.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 313.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 312.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 310.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 310.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 306.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 303.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 303.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 303.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 300.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 300.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 289.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 287.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 286.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 284.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 284.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 283.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 283.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 280.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 276.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 274.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 273.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 273.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 270.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 270.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 269.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 262.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 261.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 260.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 256.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 255.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 242.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 239.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 235.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 228.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

510.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 510.8
FF:10151-102I7 76 years, female 510.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.2
Pig sample Sample description nTPM
Amygdala
nTPM: 135.2
Samples: 4

Max nTPM: 168.3
Min nTPM: 111.7
Sample A Female 168.3
Sample B Female 140.2
Sample C Male 120.7
Sample D Male 111.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 274.1
Samples: 4

Max nTPM: 290.3
Min nTPM: 258.8
Sample A Male 258.8
Sample B Male 277.1
Sample C Female 290.3
Sample D Female 270.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.5
71021172 Antisense, RP_050531_01_G07, Mouse strain C57BL/6J (56 days, male) 3.5

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