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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:472.9 nTPM
HPA Brain:344.2 nTPM
GTEx:472.9 nTPM
FANTOM5:750.2 Scaled Tags Per Million
Pig:271.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 287.7
1981 Female, age 72, midline 344.8
2565 Male, age 75, midline 302.5
2194 Female, age 79, both hemispheres 270.5
2816 Male, age 47, midline 264.3
2048 Male, age 55, midline 256.6
Cervical spinal cord, dorsal horn
nTPM: 298.3
2173 Female, age 72, unknown 364.2
2296 Male, age 66, both hemispheres 361.4
2069 Male, age 47, both hemispheres 338.0
1877 Male, age 55, unknown 285.7
2721 Male, age 90, both hemispheres 235.3
2297 Male, age 75, both hemispheres 205.2
Cervical spinal cord, ventral horn
nTPM: 344.2
2809 Male, age 90, both hemispheres 418.4
2480 Male, age 75, both hemispheres 416.7
2098 Female, age 72, unknown 404.7
2295 Male, age 66, both hemispheres 302.3
2068 Male, age 55, unknown 290.1
2820 Female, age 79, both hemispheres 232.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

472.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 472.9
Samples: 204

Max nTPM: 939.9
Min nTPM: 243.2
Std nTPM: 111.6
Median nTPM: 459.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 939.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 874.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 861.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 815.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 764.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 728.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 727.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 678.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 673.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 664.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 645.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 645.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 633.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 631.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 629.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 625.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 622.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 618.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 616.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 611.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 605.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 605.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 602.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 601.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 600.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 598.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 594.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 593.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 586.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 583.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 580.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 574.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 574.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 573.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 573.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 571.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 571.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 563.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 560.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 554.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 551.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 546.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 546.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 544.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 542.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 541.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 538.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 537.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 535.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 534.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 534.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 533.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 528.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 526.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 524.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 519.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 518.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 514.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 513.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 513.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 512.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 511.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 510.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 509.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 508.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 508.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 507.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 504.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 503.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 500.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 498.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 493.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 493.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 491.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 491.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 490.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 490.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 490.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 490.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 489.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 488.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 486.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 485.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 485.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 482.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 482.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 481.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 478.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 475.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 474.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 472.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 472.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 471.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 469.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 468.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 467.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 466.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 464.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 462.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 461.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 461.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 460.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 459.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 459.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 457.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 457.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 456.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 456.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 455.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 453.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 453.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 448.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 448.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 448.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 447.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 447.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 447.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 447.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 446.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 446.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 446.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 443.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 442.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 440.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 439.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 439.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 437.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 436.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 434.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 432.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 431.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 430.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 430.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 428.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 428.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 426.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 423.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 423.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 421.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 421.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 419.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 417.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 413.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 412.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 412.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 411.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 411.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 401.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 399.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 397.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 395.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 395.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 395.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 392.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 390.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 389.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 387.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 384.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 384.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 381.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 380.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 378.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 376.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 375.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 375.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 374.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 374.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 374.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 372.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 370.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 368.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 365.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 363.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 361.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 359.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 356.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 355.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 352.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 351.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 348.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 347.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 345.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 343.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 342.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 339.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 337.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 336.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 334.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 333.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 331.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 331.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 325.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 324.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 321.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 318.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 318.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 311.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 310.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 307.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 299.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 299.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 263.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 244.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 243.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

750.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 750.2
FF:10181-103D1 60 years, female 844.3
FF:10159-103A6 76 years, female 656.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 271.2
Samples: 4

Max nTPM: 419.7
Min nTPM: 180.4
Sample A Female 180.4
Sample B Female 272.2
Sample C Male 419.7
Sample D Male 212.3
Ventral spinal cord
nTPM: 225.0
Samples: 4

Max nTPM: 266.1
Min nTPM: 175.8
Sample A Female 175.8
Sample B Female 240.7
Sample C Male 266.1
Sample D Male 217.3

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