A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1738.9
nTPM
Monaco:
2217.8
nTPM
Schmiedel:
748.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1738.9
HPA sample
nTPM
Memory B-cell nTPM: 1738.9
Samples: 6
Max nTPM: 2145.7
Min nTPM: 1593.6
P10809_1017
1652.1
P10809_1025
1820.2
P10809_1044
2145.7
P10809_1063
1593.6
P10809_1092
1596.7
P10809_1105
1625.0
Naive B-cell nTPM: 1696.4
Samples: 6
Max nTPM: 2596.5
Min nTPM: 1438.4
P10809_1011
1488.1
P10809_1029
1538.6
P10809_1048
2596.5
P10809_1067
1438.4
P10809_1091
1450.1
P10809_1104
1666.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2217.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1741.8
Samples: 4
Max nTPM: 2642.7
Min nTPM: 1099.0
RHH5310_R3677
2642.7
RHH5218_R3590
1417.8
RHH5247_R3619
1807.8
RHH5276_R3648
1099.0
Naive B-cell nTPM: 1995.7
Samples: 4
Max nTPM: 3126.2
Min nTPM: 1351.7
RHH5308_R3675
3126.2
RHH5216_R3588
1894.4
RHH5245_R3617
1351.7
RHH5274_R3646
1610.3
Non-switched memory B-cell nTPM: 1943.0
Samples: 4
Max nTPM: 2644.2
Min nTPM: 1222.9
RHH5309_R3676
2644.2
RHH5217_R3589
1903.9
RHH5246_R3618
2000.9
RHH5275_R3647
1222.9
Plasmablast nTPM: 1905.8
Samples: 4
Max nTPM: 2165.9
Min nTPM: 1522.5
RHH5312_R3679
2110.6
RHH5220_R3592
1824.0
RHH5249_R3621
2165.9
RHH5278_R3650
1522.5
Switched memory B-cell nTPM: 2217.8
Samples: 4
Max nTPM: 3363.8
Min nTPM: 1260.8
RHH5311_R3678
3363.8
RHH5219_R3591
2357.3
RHH5248_R3620
1889.4
RHH5277_R3649
1260.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
748.6
Schmiedel sample id
TPM
Naive B-cell TPM: 748.6
Samples: 91
Max TPM: 1055.3
Min TPM: 301.5
B_CELL_NAIVE_1
1055.3
B_CELL_NAIVE_2
964.5
B_CELL_NAIVE_3
951.0
B_CELL_NAIVE_4
940.1
B_CELL_NAIVE_5
935.0
B_CELL_NAIVE_6
913.8
B_CELL_NAIVE_7
904.3
B_CELL_NAIVE_8
903.1
B_CELL_NAIVE_9
899.8
B_CELL_NAIVE_10
898.3
B_CELL_NAIVE_11
891.4
B_CELL_NAIVE_12
889.2
B_CELL_NAIVE_13
886.0
B_CELL_NAIVE_14
885.9
B_CELL_NAIVE_15
882.3
B_CELL_NAIVE_16
879.3
B_CELL_NAIVE_17
878.9
B_CELL_NAIVE_18
877.5
B_CELL_NAIVE_19
876.8
B_CELL_NAIVE_20
873.8
B_CELL_NAIVE_21
863.5
B_CELL_NAIVE_22
861.2
B_CELL_NAIVE_23
858.9
B_CELL_NAIVE_24
857.3
B_CELL_NAIVE_25
856.8
B_CELL_NAIVE_26
854.5
B_CELL_NAIVE_27
854.3
B_CELL_NAIVE_28
854.1
B_CELL_NAIVE_29
852.0
B_CELL_NAIVE_30
848.1
B_CELL_NAIVE_31
846.8
B_CELL_NAIVE_32
837.4
B_CELL_NAIVE_33
837.3
B_CELL_NAIVE_34
837.0
B_CELL_NAIVE_35
829.8
B_CELL_NAIVE_36
828.3
B_CELL_NAIVE_37
826.7
B_CELL_NAIVE_38
826.0
B_CELL_NAIVE_39
807.6
B_CELL_NAIVE_40
807.5
B_CELL_NAIVE_41
804.8
B_CELL_NAIVE_42
800.8
B_CELL_NAIVE_43
797.6
B_CELL_NAIVE_44
796.4
B_CELL_NAIVE_45
796.2
B_CELL_NAIVE_46
795.5
B_CELL_NAIVE_47
789.1
B_CELL_NAIVE_48
784.8
B_CELL_NAIVE_49
777.7
B_CELL_NAIVE_50
777.0
B_CELL_NAIVE_51
769.2
B_CELL_NAIVE_52
766.7
B_CELL_NAIVE_53
762.9
B_CELL_NAIVE_54
742.3
B_CELL_NAIVE_55
741.7
B_CELL_NAIVE_56
739.1
B_CELL_NAIVE_57
734.1
B_CELL_NAIVE_58
732.2
B_CELL_NAIVE_59
730.2
B_CELL_NAIVE_60
728.4
B_CELL_NAIVE_61
727.4
B_CELL_NAIVE_62
721.3
B_CELL_NAIVE_63
716.9
B_CELL_NAIVE_64
714.0
B_CELL_NAIVE_65
708.0
B_CELL_NAIVE_66
702.9
B_CELL_NAIVE_67
698.2
B_CELL_NAIVE_68
690.4
B_CELL_NAIVE_69
686.6
B_CELL_NAIVE_70
670.1
B_CELL_NAIVE_71
669.1
B_CELL_NAIVE_72
666.5
B_CELL_NAIVE_73
651.1
B_CELL_NAIVE_74
628.9
B_CELL_NAIVE_75
604.5
B_CELL_NAIVE_76
593.1
B_CELL_NAIVE_77
590.3
B_CELL_NAIVE_78
574.6
B_CELL_NAIVE_79
549.9
B_CELL_NAIVE_80
549.8
B_CELL_NAIVE_81
533.2
B_CELL_NAIVE_82
533.1
B_CELL_NAIVE_83
510.4
B_CELL_NAIVE_84
456.0
B_CELL_NAIVE_85
442.0
B_CELL_NAIVE_86
408.8
B_CELL_NAIVE_87
379.4
B_CELL_NAIVE_88
375.5
B_CELL_NAIVE_89
344.2
B_CELL_NAIVE_90
327.4
B_CELL_NAIVE_91
301.5
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