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BETA
  • SUMMARY

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  • RACK1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1738.9 nTPM
Monaco:2217.8 nTPM
Schmiedel:748.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1738.9
HPA sample nTPM
Memory B-cell
nTPM: 1738.9
Samples: 6

Max nTPM: 2145.7
Min nTPM: 1593.6
P10809_1017 1652.1
P10809_1025 1820.2
P10809_1044 2145.7
P10809_1063 1593.6
P10809_1092 1596.7
P10809_1105 1625.0
Naive B-cell
nTPM: 1696.4
Samples: 6

Max nTPM: 2596.5
Min nTPM: 1438.4
P10809_1011 1488.1
P10809_1029 1538.6
P10809_1048 2596.5
P10809_1067 1438.4
P10809_1091 1450.1
P10809_1104 1666.7

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2217.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1741.8
Samples: 4

Max nTPM: 2642.7
Min nTPM: 1099.0
RHH5310_R3677 2642.7
RHH5218_R3590 1417.8
RHH5247_R3619 1807.8
RHH5276_R3648 1099.0
Naive B-cell
nTPM: 1995.7
Samples: 4

Max nTPM: 3126.2
Min nTPM: 1351.7
RHH5308_R3675 3126.2
RHH5216_R3588 1894.4
RHH5245_R3617 1351.7
RHH5274_R3646 1610.3
Non-switched memory B-cell
nTPM: 1943.0
Samples: 4

Max nTPM: 2644.2
Min nTPM: 1222.9
RHH5309_R3676 2644.2
RHH5217_R3589 1903.9
RHH5246_R3618 2000.9
RHH5275_R3647 1222.9
Plasmablast
nTPM: 1905.8
Samples: 4

Max nTPM: 2165.9
Min nTPM: 1522.5
RHH5312_R3679 2110.6
RHH5220_R3592 1824.0
RHH5249_R3621 2165.9
RHH5278_R3650 1522.5
Switched memory B-cell
nTPM: 2217.8
Samples: 4

Max nTPM: 3363.8
Min nTPM: 1260.8
RHH5311_R3678 3363.8
RHH5219_R3591 2357.3
RHH5248_R3620 1889.4
RHH5277_R3649 1260.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

748.6
Schmiedel sample id TPM
Naive B-cell
TPM: 748.6
Samples: 91

Max TPM: 1055.3
Min TPM: 301.5
B_CELL_NAIVE_1 1055.3
B_CELL_NAIVE_2 964.5
B_CELL_NAIVE_3 951.0
B_CELL_NAIVE_4 940.1
B_CELL_NAIVE_5 935.0
B_CELL_NAIVE_6 913.8
B_CELL_NAIVE_7 904.3
B_CELL_NAIVE_8 903.1
B_CELL_NAIVE_9 899.8
B_CELL_NAIVE_10 898.3
B_CELL_NAIVE_11 891.4
B_CELL_NAIVE_12 889.2
B_CELL_NAIVE_13 886.0
B_CELL_NAIVE_14 885.9
B_CELL_NAIVE_15 882.3
B_CELL_NAIVE_16 879.3
B_CELL_NAIVE_17 878.9
B_CELL_NAIVE_18 877.5
B_CELL_NAIVE_19 876.8
B_CELL_NAIVE_20 873.8
B_CELL_NAIVE_21 863.5
B_CELL_NAIVE_22 861.2
B_CELL_NAIVE_23 858.9
B_CELL_NAIVE_24 857.3
B_CELL_NAIVE_25 856.8
B_CELL_NAIVE_26 854.5
B_CELL_NAIVE_27 854.3
B_CELL_NAIVE_28 854.1
B_CELL_NAIVE_29 852.0
B_CELL_NAIVE_30 848.1
B_CELL_NAIVE_31 846.8
B_CELL_NAIVE_32 837.4
B_CELL_NAIVE_33 837.3
B_CELL_NAIVE_34 837.0
B_CELL_NAIVE_35 829.8
B_CELL_NAIVE_36 828.3
B_CELL_NAIVE_37 826.7
B_CELL_NAIVE_38 826.0
B_CELL_NAIVE_39 807.6
B_CELL_NAIVE_40 807.5
B_CELL_NAIVE_41 804.8
B_CELL_NAIVE_42 800.8
B_CELL_NAIVE_43 797.6
B_CELL_NAIVE_44 796.4
B_CELL_NAIVE_45 796.2
B_CELL_NAIVE_46 795.5
B_CELL_NAIVE_47 789.1
B_CELL_NAIVE_48 784.8
B_CELL_NAIVE_49 777.7
B_CELL_NAIVE_50 777.0
B_CELL_NAIVE_51 769.2
B_CELL_NAIVE_52 766.7
B_CELL_NAIVE_53 762.9
B_CELL_NAIVE_54 742.3
B_CELL_NAIVE_55 741.7
B_CELL_NAIVE_56 739.1
B_CELL_NAIVE_57 734.1
B_CELL_NAIVE_58 732.2
B_CELL_NAIVE_59 730.2
B_CELL_NAIVE_60 728.4
B_CELL_NAIVE_61 727.4
B_CELL_NAIVE_62 721.3
B_CELL_NAIVE_63 716.9
B_CELL_NAIVE_64 714.0
B_CELL_NAIVE_65 708.0
B_CELL_NAIVE_66 702.9
B_CELL_NAIVE_67 698.2
B_CELL_NAIVE_68 690.4
B_CELL_NAIVE_69 686.6
B_CELL_NAIVE_70 670.1
B_CELL_NAIVE_71 669.1
B_CELL_NAIVE_72 666.5
B_CELL_NAIVE_73 651.1
B_CELL_NAIVE_74 628.9
B_CELL_NAIVE_75 604.5
B_CELL_NAIVE_76 593.1
B_CELL_NAIVE_77 590.3
B_CELL_NAIVE_78 574.6
B_CELL_NAIVE_79 549.9
B_CELL_NAIVE_80 549.8
B_CELL_NAIVE_81 533.2
B_CELL_NAIVE_82 533.1
B_CELL_NAIVE_83 510.4
B_CELL_NAIVE_84 456.0
B_CELL_NAIVE_85 442.0
B_CELL_NAIVE_86 408.8
B_CELL_NAIVE_87 379.4
B_CELL_NAIVE_88 375.5
B_CELL_NAIVE_89 344.2
B_CELL_NAIVE_90 327.4
B_CELL_NAIVE_91 301.5
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