A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1095.0
nTPM
Monaco:
699.9
nTPM
Schmiedel:
477.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1095.0
HPA sample
nTPM
NK-cell nTPM: 1095.0
Samples: 6
Max nTPM: 1270.1
Min nTPM: 855.7
P10809_1013
889.7
P10809_1033
1254.8
P10809_1052
1150.3
P10809_1071
1270.1
P10809_1093
855.7
P10809_1103
1149.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
699.9
Monaco sample
nTPM
NK-cell nTPM: 699.9
Samples: 4
Max nTPM: 834.8
Min nTPM: 458.2
RHH5316_R3683
834.8
RHH5224_R3596
723.5
RHH5253_R3625
458.2
RHH5282_R3654
783.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
477.0
Schmiedel sample id
TPM
NK-cell TPM: 477.0
Samples: 90
Max TPM: 683.1
Min TPM: 275.2
NK_1
683.1
NK_2
613.1
NK_3
604.1
NK_4
602.0
NK_5
600.1
NK_6
598.6
NK_7
590.3
NK_8
589.9
NK_9
578.0
NK_10
576.9
NK_11
571.9
NK_12
571.3
NK_13
569.5
NK_14
561.1
NK_15
559.6
NK_16
551.8
NK_17
548.5
NK_18
548.4
NK_19
544.8
NK_20
543.0
NK_21
538.6
NK_22
533.3
NK_23
531.5
NK_24
529.7
NK_25
528.6
NK_26
527.8
NK_27
526.2
NK_28
525.9
NK_29
524.9
NK_30
524.6
NK_31
523.0
NK_32
519.7
NK_33
517.4
NK_34
514.3
NK_35
513.2
NK_36
512.6
NK_37
508.6
NK_38
507.9
NK_39
507.2
NK_40
505.8
NK_41
505.1
NK_42
504.4
NK_43
499.0
NK_44
492.7
NK_45
489.2
NK_46
489.1
NK_47
482.7
NK_48
479.6
NK_49
477.2
NK_50
475.0
NK_51
470.9
NK_52
468.9
NK_53
465.5
NK_54
464.5
NK_55
458.6
NK_56
457.0
NK_57
456.5
NK_58
452.6
NK_59
449.3
NK_60
445.7
NK_61
441.4
NK_62
441.0
NK_63
437.9
NK_64
434.3
NK_65
431.1
NK_66
428.5
NK_67
422.1
NK_68
419.1
NK_69
417.3
NK_70
409.6
NK_71
409.3
NK_72
406.4
NK_73
404.7
NK_74
402.2
NK_75
397.8
NK_76
389.9
NK_77
385.2
NK_78
368.5
NK_79
363.8
NK_80
359.2
NK_81
355.8
NK_82
344.9
NK_83
342.4
NK_84
340.9
NK_85
340.7
NK_86
333.0
NK_87
324.6
NK_88
299.1
NK_89
297.9
NK_90
275.2
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