A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1165.7
nTPM
Monaco:
1535.0
nTPM
Schmiedel:
601.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1165.7
HPA sample
nTPM
Classical monocyte nTPM: 1165.8
Samples: 6
Max nTPM: 2322.6
Min nTPM: 789.5
P10809_1003
2322.6
P10809_1020
992.0
P10809_1039
1085.6
P10809_1058
789.5
P10809_1080
792.5
P10809_1107
1012.3
Intermediate monocyte nTPM: 909.1
Samples: 6
Max nTPM: 1127.3
Min nTPM: 681.1
P10809_1004
863.1
P10809_1023
1119.9
P10809_1042
941.4
P10809_1061
722.0
P10809_1081
681.1
P10809_1108
1127.3
Non-classical monocyte nTPM: 865.5
Samples: 5
Max nTPM: 1099.8
Min nTPM: 588.0
P10809_1005
955.1
P10809_1053
919.4
P10809_1072
765.1
P10809_1082
588.0
P10809_1109
1099.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1535.0
Monaco sample
nTPM
Classical monocyte nTPM: 1535.0
Samples: 4
Max nTPM: 2169.4
Min nTPM: 917.2
RHH5313_R3680
1331.8
RHH5221_R3593
917.2
RHH5250_R3622
2169.4
RHH5279_R3651
1721.7
Intermediate monocyte nTPM: 1313.5
Samples: 4
Max nTPM: 1801.1
Min nTPM: 769.3
RHH5314_R3681
1801.1
RHH5222_R3594
769.3
RHH5251_R3623
977.7
RHH5280_R3652
1705.8
Non-classical monocyte nTPM: 940.8
Samples: 4
Max nTPM: 1339.3
Min nTPM: 545.9
RHH5315_R3682
1066.0
RHH5223_R3595
545.9
RHH5252_R3624
812.1
RHH5281_R3653
1339.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
601.8
Schmiedel sample id
TPM
Classical monocyte TPM: 601.8
Samples: 91
Max TPM: 762.4
Min TPM: 387.1
MONOCYTES_1
762.4
MONOCYTES_2
761.7
MONOCYTES_3
747.3
MONOCYTES_4
734.4
MONOCYTES_5
726.4
MONOCYTES_6
705.8
MONOCYTES_7
692.1
MONOCYTES_8
688.4
MONOCYTES_9
688.3
MONOCYTES_10
685.3
MONOCYTES_11
684.2
MONOCYTES_12
683.6
MONOCYTES_13
683.5
MONOCYTES_14
683.2
MONOCYTES_15
683.0
MONOCYTES_16
681.7
MONOCYTES_17
680.8
MONOCYTES_18
675.7
MONOCYTES_19
674.5
MONOCYTES_20
666.7
MONOCYTES_21
666.7
MONOCYTES_22
661.5
MONOCYTES_23
658.6
MONOCYTES_24
655.2
MONOCYTES_25
654.3
MONOCYTES_26
653.1
MONOCYTES_27
647.7
MONOCYTES_28
645.7
MONOCYTES_29
645.2
MONOCYTES_30
644.7
MONOCYTES_31
640.0
MONOCYTES_32
639.8
MONOCYTES_33
637.3
MONOCYTES_34
636.8
MONOCYTES_35
636.1
MONOCYTES_36
634.2
MONOCYTES_37
630.5
MONOCYTES_38
630.3
MONOCYTES_39
626.1
MONOCYTES_40
626.0
MONOCYTES_41
625.8
MONOCYTES_42
624.2
MONOCYTES_43
622.9
MONOCYTES_44
620.0
MONOCYTES_45
618.7
MONOCYTES_46
618.1
MONOCYTES_47
613.7
MONOCYTES_48
611.4
MONOCYTES_49
611.4
MONOCYTES_50
600.4
MONOCYTES_51
597.2
MONOCYTES_52
596.6
MONOCYTES_53
587.5
MONOCYTES_54
587.4
MONOCYTES_55
586.6
MONOCYTES_56
585.8
MONOCYTES_57
585.7
MONOCYTES_58
584.0
MONOCYTES_59
582.0
MONOCYTES_60
581.9
MONOCYTES_61
577.5
MONOCYTES_62
572.4
MONOCYTES_63
570.9
MONOCYTES_64
570.1
MONOCYTES_65
569.6
MONOCYTES_66
564.0
MONOCYTES_67
563.7
MONOCYTES_68
561.5
MONOCYTES_69
551.3
MONOCYTES_70
540.8
MONOCYTES_71
536.8
MONOCYTES_72
535.8
MONOCYTES_73
533.5
MONOCYTES_74
530.3
MONOCYTES_75
525.6
MONOCYTES_76
519.5
MONOCYTES_77
516.3
MONOCYTES_78
512.3
MONOCYTES_79
510.6
MONOCYTES_80
500.9
MONOCYTES_81
498.1
MONOCYTES_82
495.9
MONOCYTES_83
477.6
MONOCYTES_84
475.3
MONOCYTES_85
468.8
MONOCYTES_86
459.5
MONOCYTES_87
441.5
MONOCYTES_88
438.0
MONOCYTES_89
432.3
MONOCYTES_90
423.6
MONOCYTES_91
387.1
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Non-classical monocyte TPM: 476.9
Samples: 90
Max TPM: 713.1
Min TPM: 259.9
M2_1
713.1
M2_2
642.9
M2_3
597.6
M2_4
582.5
M2_5
565.9
M2_6
563.8
M2_7
562.0
M2_8
560.4
M2_9
559.3
M2_10
558.3
M2_11
558.2
M2_12
557.9
M2_13
557.6
M2_14
556.2
M2_15
555.7
M2_16
553.4
M2_17
545.9
M2_18
545.2
M2_19
545.0
M2_20
543.0
M2_21
540.2
M2_22
538.2
M2_23
536.8
M2_24
536.4
M2_25
534.7
M2_26
532.3
M2_27
531.2
M2_28
529.4
M2_29
525.0
M2_30
524.8
M2_31
524.3
M2_32
523.9
M2_33
523.2
M2_34
522.6
M2_35
518.7
M2_36
518.0
M2_37
514.4
M2_38
511.3
M2_39
509.9
M2_40
509.6
M2_41
507.9
M2_42
506.9
M2_43
506.4
M2_44
505.6
M2_45
498.9
M2_46
498.7
M2_47
495.1
M2_48
495.1
M2_49
495.0
M2_50
494.3
M2_51
493.4
M2_52
483.5
M2_53
478.1
M2_54
476.6
M2_55
476.4
M2_56
470.9
M2_57
465.6
M2_58
459.8
M2_59
452.9
M2_60
442.4
M2_61
441.6
M2_62
436.5
M2_63
434.2
M2_64
434.0
M2_65
429.8
M2_66
429.1
M2_67
415.0
M2_68
413.1
M2_69
412.3
M2_70
411.2
M2_71
410.7
M2_72
410.4
M2_73
405.7
M2_74
402.8
M2_75
396.8
M2_76
396.7
M2_77
391.4
M2_78
379.1
M2_79
372.7
M2_80
370.0
M2_81
364.0
M2_82
342.3
M2_83
334.7
M2_84
318.9
M2_85
318.4
M2_86
314.3
M2_87
310.5
M2_88
269.1
M2_89
262.5
M2_90
259.9
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