BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5688.1 nTPM
HPA Brain:2267.8 nTPM
GTEx:5688.1 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Macaque:8.3 nTPM
Pig:2146.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2267.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1676.3
2666 Male, age 74, left hemisphere 2244.6
1870 Female, age 42, unknown 2053.9
1830 Male, age 51, unknown 1978.4
2411 Female, age 72, unknown 1907.0
2828 Female, age 72, unknown 1695.2
1833 Male, age 53, unknown 1683.9
2019 Male, age 18, unknown 1560.4
1827 Male, age 72, unknown 1513.0
2586 Male, age 75, left hemisphere 1195.2
2219 Male, age 76, both hemispheres 931.7
Dorsal raphe nucleus
nTPM: 1502.4
2750 Male, age 76, both hemispheres 1646.9
1828 Male, age 53, unknown 1605.2
2016 Female, age 72, unknown 1566.2
2298 Female, age 72, unknown 1347.2
2047 Male, age 72, unknown 1346.4
Inferior colliculus
nTPM: 1247.6
1890 Male, age 53, unknown 1359.6
1848 Female, age 42, unknown 1264.7
2097 Female, age 72, unknown 1219.3
2849 Male, age 72, unknown 1147.0
Median raphe nucleus
nTPM: 1308.9
2220 Male, age 76, midline 1308.9
Periaquaductal grey, anterior
nTPM: 1478.8
1947 Male, age 18, unknown 1800.6
1795 Male, age 51, unknown 1417.6
2502 Female, age 75, unknown 1218.2
Periaquaductal grey, dorsal
nTPM: 1173.5
1831 Male, age 72, unknown 1467.7
2464 Female, age 72, unknown 1168.6
2850 Male, age 76, both hemispheres 1086.9
1840 Male, age 53, unknown 970.8
Periaquaductal grey, lateral
nTPM: 1211.8
2053 Male, age 18, unknown 1372.2
2272 Male, age 74, both hemispheres 1233.9
2140 Male, age 76, both hemispheres 1029.4
Pretectal area
nTPM: 1302.2
1817 Female, age 42, unknown 1516.2
1815 Male, age 53, unknown 1490.1
2825 Male, age 18, unknown 1466.7
2007 Male, age 72, unknown 1414.8
2316 Male, age 76, right hemisphere 1409.9
2273 Male, age 74, both hemispheres 1268.7
2407 Male, age 75, both hemispheres 1246.1
2224 Female, age 72, unknown 1231.6
1816 Male, age 51, unknown 1180.2
1944 Female, age 72, unknown 1156.9
2667 Female, age 75, unknown 942.8
Red nucleus
nTPM: 2267.8
2503 Female, age 72, unknown 2992.8
2588 Male, age 74, left hemisphere 2828.0
2725 Female, age 75, unknown 2688.1
1821 Female, age 72, unknown 2566.2
1865 Male, age 51, unknown 2375.8
1904 Male, age 53, unknown 2305.5
1954 Female, age 42, unknown 2301.9
2227 Male, age 72, unknown 2189.0
2769 Male, age 72, unknown 2149.9
2823 Male, age 76, right hemisphere 1737.4
2785 Male, age 18, unknown 1557.1
2584 Male, age 75, left hemisphere 1522.3
Substantia nigra
nTPM: 1891.3
2665 Male, age 74, both hemispheres 2150.9
2590 Female, age 75, unknown 2150.5
1916 Female, age 42, unknown 2149.9
1851 Male, age 51, unknown 2006.7
2699 Male, age 18, unknown 1961.9
2409 Female, age 72, unknown 1889.8
2241 Male, age 72, unknown 1700.4
2583 Male, age 75, right hemisphere 1695.0
1889 Female, age 72, unknown 1634.1
1941 Male, age 53, unknown 1573.9
Superior colliculus
nTPM: 1513.7
2587 Male, age 74, left hemisphere 2135.5
1913 Female, age 42, unknown 1865.6
2668 Female, age 75, unknown 1754.4
1995 Male, age 72, unknown 1605.6
1839 Male, age 51, unknown 1474.9
1796 Male, age 53, unknown 1440.7
2261 Male, age 18, unknown 1321.2
1895 Male, age 76, right hemisphere 1266.7
2087 Female, age 72, unknown 1169.7
2664 Male, age 75, both hemispheres 1102.9
Ventral tegmental area
nTPM: 1916.7
2223 Female, age 72, unknown 2514.7
2410 Female, age 72, unknown 2048.2
2021 Male, age 53, unknown 1910.6
1915 Female, age 42, unknown 1908.4
2218 Male, age 76, both hemispheres 1578.0
1942 Male, age 51, unknown 1540.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5688.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5688.1
Samples: 183

Max nTPM: 17353.6
Min nTPM: 2029.4
Std nTPM: 2293.8
Median nTPM: 5082.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 17353.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 14297.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 12375.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 11916.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11205.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10481.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 10342.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9856.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 9755.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 9738.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 9660.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 8.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 8.3
Samples: 1

Max nTPM: 8.3
Min nTPM: 8.3
Sample A 8.3
Midbrain
nTPM: 0.0
Samples: 1

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Superior colliculi
nTPM: 0.0
Samples: 1

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2146.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2146.0
Samples: 3

Max nTPM: 2639.4
Min nTPM: 1736.2
Sample A Female 2639.4
Sample B Female 2062.5
Sample C Male 1736.2
Midbrain
nTPM: 1407.2
Samples: 3

Max nTPM: 2018.4
Min nTPM: 981.3
Sample B Female 2018.4
Sample C Male 1222.0
Sample D Male 981.3
Periaqueductal gray
nTPM: 1447.4
Samples: 3

Max nTPM: 1589.5
Min nTPM: 1197.3
Sample B Female 1589.5
Sample C Male 1555.3
Sample D Male 1197.3
Superior colliculi
nTPM: 1484.3
Samples: 4

Max nTPM: 1864.5
Min nTPM: 1252.9
Sample A Female 1864.5
Sample B Female 1252.9
Sample C Male 1536.3
Sample D Male 1283.5

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