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  • SMIM11
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:26.1 nTPM
HPA Brain:22.1 nTPM
GTEx:26.1 nTPM
Pig:5.0 nTPM
Mouse:39.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Sample id Sample description nTPM
Amygdala
nTPM: 22.1
1987 Female, age 91, left hemisphere 23.4
2514 Male, age 75, right hemisphere 23.0
2695 Female, age 67, right hemisphere 22.8
2814 Male, age 76, right hemisphere 21.3
2517 Female, age 94, left hemisphere 20.1
Basal amygdala
nTPM: 20.7
2609 Male, age 75, right hemisphere 22.2
2110 Male, age 80, left hemisphere 21.8
1955 Male, age 76, both hemispheres 20.6
2243 Female, age 91, right hemisphere 20.4
2685 Female, age 94, left hemisphere 20.2
2827 Female, age 67, right hemisphere 19.3
Central amygdala
nTPM: 21.1
2515 Male, age 75, right hemisphere 26.1
2239 Male, age 80, left hemisphere 21.0
1905 Male, age 76, both hemispheres 20.6
2701 Female, age 91, right hemisphere 19.1
2826 Female, age 94, left hemisphere 18.9
Corticomedial amygdala
nTPM: 21.2
2428 Male, age 75, right hemisphere 24.7
2429 Female, age 94, left hemisphere 22.0
2829 Male, age 80, left hemisphere 22.0
2242 Female, age 91, right hemisphere 20.9
2240 Male, age 76, both hemispheres 19.0
2535 Female, age 67, right hemisphere 18.7
Lateral amygdala
nTPM: 19.7
2516 Male, age 75, right hemisphere 21.6
2255 Female, age 91, right hemisphere 20.2
1883 Male, age 76, both hemispheres 20.1
2830 Female, age 67, right hemisphere 19.2
2534 Female, age 94, left hemisphere 18.8
2256 Male, age 80, left hemisphere 18.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 26.1
Samples: 181

Max nTPM: 63.8
Min nTPM: 10.2
Std nTPM: 8.6
Median nTPM: 25.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 63.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 60.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 57.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 53.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 46.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 45.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 43.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 42.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 41.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 40.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 38.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 38.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 38.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 35.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 35.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 34.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 34.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 34.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 34.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 33.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 32.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 32.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 31.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 31.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 31.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 31.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 31.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 31.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 31.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 31.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 31.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 30.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 30.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 30.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 30.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 30.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 29.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 29.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 29.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 29.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 29.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 28.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 28.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 28.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 28.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 28.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 28.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 28.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 27.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 27.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 27.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 27.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 27.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 27.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 27.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 27.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 26.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 26.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 26.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 26.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 26.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 26.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 26.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 26.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 26.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 25.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 25.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 25.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 25.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 25.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 25.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 25.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 25.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 25.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 25.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 25.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 25.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 25.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 25.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 24.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 24.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 24.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 24.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 24.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 24.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 24.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 23.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 23.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 23.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 23.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 23.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 23.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 23.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 23.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 23.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 23.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 23.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 23.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 23.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 23.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 22.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 22.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 22.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 22.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 22.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 22.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 22.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 22.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 21.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 21.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 21.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 21.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 21.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 21.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 21.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 21.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 21.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 21.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 21.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 20.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 20.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 20.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 20.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 20.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 20.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 20.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 19.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 19.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 19.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 19.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 19.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 19.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 19.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 19.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 18.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 18.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 18.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 18.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 18.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 18.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 18.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 18.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 18.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 17.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 17.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 17.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 17.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 16.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 16.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 15.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 14.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 14.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 13.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 13.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 13.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 12.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 12.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 12.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 10.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 10.2
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AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.0
Pig sample Sample description nTPM
Amygdala
nTPM: 5.0
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.1
Sample A Female 6.1
Sample B Female 5.1
Sample C Male 4.1
Sample D Male 4.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.3
Samples: 4

Max nTPM: 40.6
Min nTPM: 37.7
Sample A Male 39.5
Sample B Male 40.6
Sample C Female 39.2
Sample D Female 37.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
633288 Antisense, RP_040907_02_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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