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  • MRPL23
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:92.7 nTPM
HPA Brain:12.2 nTPM
GTEx:92.7 nTPM
FANTOM5:24.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.2
Sample id Sample description nTPM
Amygdala
nTPM: 11.6
2517 Female, age 94, left hemisphere 14.2
2814 Male, age 76, right hemisphere 12.3
1987 Female, age 91, left hemisphere 12.2
2514 Male, age 75, right hemisphere 10.7
2695 Female, age 67, right hemisphere 8.6
Basal amygdala
nTPM: 12.1
2827 Female, age 67, right hemisphere 15.2
1955 Male, age 76, both hemispheres 12.9
2110 Male, age 80, left hemisphere 12.2
2609 Male, age 75, right hemisphere 12.0
2243 Female, age 91, right hemisphere 10.7
2685 Female, age 94, left hemisphere 9.5
Central amygdala
nTPM: 11.9
2826 Female, age 94, left hemisphere 17.5
1905 Male, age 76, both hemispheres 12.7
2515 Male, age 75, right hemisphere 10.9
2701 Female, age 91, right hemisphere 10.2
2239 Male, age 80, left hemisphere 8.5
Corticomedial amygdala
nTPM: 12.2
2829 Male, age 80, left hemisphere 15.8
2535 Female, age 67, right hemisphere 13.2
2240 Male, age 76, both hemispheres 11.2
2429 Female, age 94, left hemisphere 11.2
2242 Female, age 91, right hemisphere 10.8
2428 Male, age 75, right hemisphere 10.8
Lateral amygdala
nTPM: 11.9
2255 Female, age 91, right hemisphere 13.0
2516 Male, age 75, right hemisphere 12.9
2534 Female, age 94, left hemisphere 12.9
2256 Male, age 80, left hemisphere 11.5
2830 Female, age 67, right hemisphere 10.7
1883 Male, age 76, both hemispheres 10.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 92.7
Samples: 181

Max nTPM: 238.8
Min nTPM: 40.3
Std nTPM: 33.3
Median nTPM: 84.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 238.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 204.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 193.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 186.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 186.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 179.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 176.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 165.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 165.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 159.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 157.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 155.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 153.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 150.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 146.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 145.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 143.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 143.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 140.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 136.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 136.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 133.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 132.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 132.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 129.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 123.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 122.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 119.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 119.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 118.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 116.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 114.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 113.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 113.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 113.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 113.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 112.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 112.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 108.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 108.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 107.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 105.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 102.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 101.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 100.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 99.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 99.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 97.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 97.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 96.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 95.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 95.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 94.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 94.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 93.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 93.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 92.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 91.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 91.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 90.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 90.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 90.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 90.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 89.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 89.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 89.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 89.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 88.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 87.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 86.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 86.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 85.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 84.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 84.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 83.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 82.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 82.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 81.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 81.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 81.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 81.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 80.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 80.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 80.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 79.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 78.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 78.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 77.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 76.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 76.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 76.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 76.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 75.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 75.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 74.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 74.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 74.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 74.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 73.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 73.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 73.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 73.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 73.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 73.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 72.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 72.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 71.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 71.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 70.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 70.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 70.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 69.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 69.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 68.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 67.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 67.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 66.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 66.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 65.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 64.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 63.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 62.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 61.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 58.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 55.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 54.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 49.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 49.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 48.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 46.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 42.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 40.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 24.6
FF:10151-102I7 76 years, female 24.6

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