MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.5 nTPM
HPA Brain:13.5 nTPM
GTEx:91.5 nTPM
FANTOM5:32.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.8
2586 Male, age 75, left hemisphere 16.2
2019 Male, age 18, unknown 14.1
1827 Male, age 72, unknown 11.4
2828 Female, age 72, unknown 11.3
1870 Female, age 42, unknown 10.9
2411 Female, age 72, unknown 10.8
1833 Male, age 53, unknown 9.7
1830 Male, age 51, unknown 8.4
2219 Male, age 76, both hemispheres 7.9
2666 Male, age 74, left hemisphere 7.2
Dorsal raphe nucleus
nTPM: 12.4
2298 Female, age 72, unknown 15.4
2750 Male, age 76, both hemispheres 12.1
1828 Male, age 53, unknown 12.0
2047 Male, age 72, unknown 11.5
2016 Female, age 72, unknown 10.9
Inferior colliculus
nTPM: 10.3
2097 Female, age 72, unknown 12.5
1890 Male, age 53, unknown 10.2
1848 Female, age 42, unknown 9.6
2849 Male, age 72, unknown 9.0
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 13.2
2502 Female, age 75, unknown 14.9
1795 Male, age 51, unknown 14.7
1947 Male, age 18, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 9.1
2464 Female, age 72, unknown 9.5
2850 Male, age 76, both hemispheres 9.1
1840 Male, age 53, unknown 8.9
1831 Male, age 72, unknown 8.8
Periaquaductal grey, lateral
nTPM: 12.8
2272 Male, age 74, both hemispheres 13.7
2140 Male, age 76, both hemispheres 12.6
2053 Male, age 18, unknown 12.3
Pretectal area
nTPM: 12.2
2316 Male, age 76, right hemisphere 15.8
2273 Male, age 74, both hemispheres 13.9
2224 Female, age 72, unknown 13.8
2007 Male, age 72, unknown 13.1
1816 Male, age 51, unknown 12.9
1944 Female, age 72, unknown 12.6
2667 Female, age 75, unknown 12.5
1817 Female, age 42, unknown 11.7
1815 Male, age 53, unknown 9.8
2407 Male, age 75, both hemispheres 9.0
2825 Male, age 18, unknown 8.9
Red nucleus
nTPM: 11.6
2785 Male, age 18, unknown 15.5
2823 Male, age 76, right hemisphere 13.4
1821 Female, age 72, unknown 13.0
2227 Male, age 72, unknown 12.7
1904 Male, age 53, unknown 12.5
2769 Male, age 72, unknown 12.2
2725 Female, age 75, unknown 12.0
1865 Male, age 51, unknown 11.3
2588 Male, age 74, left hemisphere 10.9
1954 Female, age 42, unknown 9.4
2584 Male, age 75, left hemisphere 8.4
2503 Female, age 72, unknown 7.4
Substantia nigra
nTPM: 13.5
1916 Female, age 42, unknown 18.4
2241 Male, age 72, unknown 15.7
1851 Male, age 51, unknown 15.0
2665 Male, age 74, both hemispheres 14.3
2590 Female, age 75, unknown 14.0
1941 Male, age 53, unknown 12.6
1889 Female, age 72, unknown 12.1
2699 Male, age 18, unknown 12.0
2583 Male, age 75, right hemisphere 10.7
2409 Female, age 72, unknown 10.2
Superior colliculus
nTPM: 10.9
2587 Male, age 74, left hemisphere 15.0
1796 Male, age 53, unknown 12.8
1913 Female, age 42, unknown 12.3
1895 Male, age 76, right hemisphere 11.9
2261 Male, age 18, unknown 11.8
2664 Male, age 75, both hemispheres 10.2
2087 Female, age 72, unknown 10.0
1839 Male, age 51, unknown 8.8
2668 Female, age 75, unknown 8.0
1995 Male, age 72, unknown 7.9
Ventral tegmental area
nTPM: 12.6
1915 Female, age 42, unknown 14.2
2021 Male, age 53, unknown 14.0
1942 Male, age 51, unknown 13.8
2223 Female, age 72, unknown 13.3
2218 Male, age 76, both hemispheres 11.9
2410 Female, age 72, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.5
Samples: 183

Max nTPM: 177.7
Min nTPM: 26.8
Std nTPM: 27.9
Median nTPM: 89.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 177.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 173.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 169.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 165.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 163.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 158.1
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 155.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 147.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 145.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 142.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 134.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

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