HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.1 nTPM
HPA Brain:60.8 nTPM
GTEx:62.1 nTPM
FANTOM5:264.8 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:1.2 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 60.8
Sample id Sample description nTPM
Hippocampus
nTPM: 60.8
1911 Female, age 85, right hemisphere 69.5
1898 Male, age 80, left hemisphere 61.8
1855 Male, age 76, left hemisphere 60.6
2529 Female, age 94, left hemisphere 58.9
2148 Female, age 91, left hemisphere 56.9
2621 Female, age 67, right hemisphere 56.8
Dentate gyrus
nTPM: 58.1
2531 Female, age 67, both hemispheres 69.9
2010 Male, age 76, both hemispheres 69.6
2528 Male, age 74, both hemispheres 58.1
2530 Female, age 94, left hemisphere 57.4
2246 Female, age 85, both hemispheres 48.9
1927 Female, age 91, both hemispheres 44.9
Entorhinal gyrus
nTPM: 45.9
2117 Female, age 91, right hemisphere 65.3
1787 Male, age 76, left hemisphere 60.5
2764 Male, age 80, right hemisphere 41.9
1938 Female, age 85, left hemisphere 41.4
2686 Male, age 75, right hemisphere 37.8
2613 Female, age 94, left hemisphere 28.4
Hippocampus, CA1
nTPM: 53.4
2749 Male, age 80, left hemisphere 65.9
1873 Female, age 85, both hemispheres 61.5
2045 Male, age 76, both hemispheres 55.9
2527 Male, age 74, both hemispheres 44.0
2082 Female, age 91, right hemisphere 39.4
Hippocampus, CA2
nTPM: 47.6
1940 Female, age 85, left hemisphere 64.0
2249 Male, age 74, both hemispheres 57.5
2437 Female, age 94, left hemisphere 48.7
2113 Female, age 91, right hemisphere 43.8
1963 Male, age 80, left hemisphere 42.9
1892 Male, age 76, both hemispheres 28.7
Hippocampus, CA3
nTPM: 55.7
2620 Female, age 94, left hemisphere 74.3
2861 Female, age 67, both hemispheres 62.9
2137 Male, age 80, left hemisphere 54.3
1891 Female, age 85, both hemispheres 52.5
1867 Male, age 76, both hemispheres 46.7
2436 Male, age 74, both hemispheres 43.8
Parahippocampal cortex
nTPM: 39.4
2018 Male, age 76, both hemispheres 61.9
1990 Female, age 91, right hemisphere 51.0
2250 Female, age 67, right hemisphere 45.8
2245 Female, age 91, both hemispheres 45.3
2622 Female, age 67, right hemisphere 40.3
1933 Female, age 85, both hemispheres 36.4
2532 Female, age 72, left hemisphere 31.7
1850 Male, age 80, both hemispheres 30.4
2693 Female, age 94, both hemispheres 26.0
2692 Male, age 74, both hemispheres 25.6
Perirhinal gyrus
nTPM: 36.8
1841 Female, age 85, right hemisphere 45.6
2521 Female, age 94, right hemisphere 42.8
1794 Male, age 80, right hemisphere 39.1
1847 Female, age 91, left hemisphere 29.8
2848 Male, age 76, right hemisphere 26.7
Subiculum
nTPM: 51.2
2729 Female, age 91, right hemisphere 57.4
2042 Male, age 76, both hemispheres 57.1
2619 Male, age 74, both hemispheres 50.2
1977 Female, age 85, both hemispheres 49.2
1901 Male, age 80, both hemispheres 48.0
2438 Female, age 94, left hemisphere 45.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 62.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 62.1
Samples: 255

Max nTPM: 260.2
Min nTPM: 6.7
Std nTPM: 42.4
Median nTPM: 49.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 260.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 243.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 215.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 200.8
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 171.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 163.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 162.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 156.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 154.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 154.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 154.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 264.8
FF:10169-103B7 60 years, female 324.0
FF:10153-102I9 76 years, female 205.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 33.3
Pig sample Sample description nTPM
Subiculum
nTPM: 7.3
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.7
Sample A Female 6.5
Sample B Female 5.7
Sample C Male 8.3
Sample D Male 8.7
Dorsal hippocampus
nTPM: 33.3
Samples: 4

Max nTPM: 42.0
Min nTPM: 11.8
Sample A Female 39.5
Sample B Female 39.9
Sample C Male 11.8
Sample D Male 42.0
Entorhinal cortex
nTPM: 4.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 1.4
Sample A Female 5.8
Sample B Female 4.3
Sample C Male 6.0
Sample D Male 1.4
Ventral hippocampus
nTPM: 22.3
Samples: 4

Max nTPM: 40.0
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 16.2
Sample C Male 18.4
Sample D Male 40.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.3
Sample C Female 0.5
Sample D Female 0.2
Hippocampal formation
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 1.2
Sample C Female 1.5
Sample D Female 1.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 8.5
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 6.7

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