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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:90.6 nTPM
HPA Brain:85.3 nTPM
GTEx:90.6 nTPM
FANTOM5:675.4 Scaled Tags Per Million
Pig:31.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.6
1981 Female, age 72, midline 100.0
2565 Male, age 75, midline 77.7
2194 Female, age 79, both hemispheres 56.2
2816 Male, age 47, midline 51.2
2048 Male, age 55, midline 48.0
Cervical spinal cord, dorsal horn
nTPM: 82.5
2069 Male, age 47, both hemispheres 133.2
2296 Male, age 66, both hemispheres 88.1
2173 Female, age 72, unknown 78.9
2721 Male, age 90, both hemispheres 73.5
2297 Male, age 75, both hemispheres 62.2
1877 Male, age 55, unknown 59.2
Cervical spinal cord, ventral horn
nTPM: 85.3
2098 Female, age 72, unknown 153.1
2809 Male, age 90, both hemispheres 123.5
2480 Male, age 75, both hemispheres 73.5
2295 Male, age 66, both hemispheres 71.5
2068 Male, age 55, unknown 60.0
2820 Female, age 79, both hemispheres 30.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 90.6
Samples: 204

Max nTPM: 449.9
Min nTPM: 7.6
Std nTPM: 66.9
Median nTPM: 70.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 449.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 345.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 302.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 270.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 254.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 245.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 222.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 221.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 219.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 217.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 214.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 209.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 203.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 198.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 198.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 197.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 193.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 191.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 189.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 189.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 188.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 183.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 181.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 173.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 171.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 169.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 165.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 159.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 158.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 157.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 156.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 149.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 148.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 148.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 145.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 143.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 143.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 140.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 139.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 139.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 134.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 132.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 132.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 130.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 129.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 129.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 128.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 126.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 124.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 121.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 119.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 119.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 118.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 117.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 116.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 116.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 115.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 112.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 107.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 107.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 106.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 103.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 101.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 100.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 99.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 99.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 98.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 98.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 98.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 97.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 97.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 96.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 95.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 95.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 94.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 93.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 93.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 93.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 91.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 91.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 88.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 88.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 87.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 87.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 87.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 86.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 85.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 81.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 77.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 76.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 76.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 75.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 73.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 70.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 70.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 70.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 69.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 68.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 67.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 65.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 64.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 64.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 63.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 63.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 62.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 62.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 59.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 59.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 58.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 58.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 57.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 56.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 56.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 55.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 55.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 54.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 54.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 52.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 52.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 51.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 51.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 50.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 49.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 49.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 49.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 48.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 47.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 47.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 46.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 45.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 44.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 43.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 42.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 42.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 42.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 41.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 39.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 38.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 38.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 38.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 37.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 37.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 35.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 35.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 34.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 33.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 33.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 33.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 33.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 33.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 33.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 32.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 32.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 32.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 32.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 32.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 31.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 30.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 30.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 29.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 29.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 28.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 28.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 28.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 26.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 25.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 24.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 23.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 23.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 23.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 23.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 23.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 19.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 18.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 16.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 15.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 15.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 15.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 13.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 13.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 13.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 12.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 10.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 10.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 7.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

675.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 675.4
FF:10181-103D1 60 years, female 938.3
FF:10159-103A6 76 years, female 412.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 31.7
Samples: 4

Max nTPM: 69.0
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 28.5
Sample C Male 69.0
Sample D Male 17.4
Ventral spinal cord
nTPM: 22.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 26.9
Sample C Male 32.3
Sample D Male 20.6

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