A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13446.4
nTPM
Monaco:
2195.9
nTPM
Schmiedel:
2706.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13446.4
HPA sample
nTPM
Memory B-cell nTPM: 13446.4
Samples: 6
Max nTPM: 15440.9
Min nTPM: 11636.7
P10809_1017
11636.7
P10809_1025
14152.6
P10809_1044
15440.9
P10809_1063
13864.5
P10809_1092
12070.8
P10809_1105
13513.0
Naive B-cell nTPM: 11553.8
Samples: 6
Max nTPM: 13981.0
Min nTPM: 9381.4
P10809_1011
9381.4
P10809_1029
11546.9
P10809_1048
13981.0
P10809_1067
11965.8
P10809_1091
10344.1
P10809_1104
12103.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2195.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2195.9
Samples: 4
Max nTPM: 3789.4
Min nTPM: 500.2
RHH5310_R3677
1894.7
RHH5218_R3590
500.2
RHH5247_R3619
3789.4
RHH5276_R3648
2599.3
Naive B-cell nTPM: 1873.9
Samples: 4
Max nTPM: 3313.2
Min nTPM: 782.7
RHH5308_R3675
1990.7
RHH5216_R3588
782.7
RHH5245_R3617
3313.2
RHH5274_R3646
1408.8
Non-switched memory B-cell nTPM: 1546.6
Samples: 4
Max nTPM: 2458.2
Min nTPM: 733.2
RHH5309_R3676
1993.7
RHH5217_R3589
733.2
RHH5246_R3618
1001.4
RHH5275_R3647
2458.2
Plasmablast nTPM: 1324.6
Samples: 4
Max nTPM: 1681.5
Min nTPM: 667.2
RHH5312_R3679
1681.5
RHH5220_R3592
667.2
RHH5249_R3621
1346.7
RHH5278_R3650
1602.9
Switched memory B-cell nTPM: 1389.0
Samples: 4
Max nTPM: 1907.1
Min nTPM: 885.3
RHH5311_R3678
1764.5
RHH5219_R3591
999.1
RHH5248_R3620
885.3
RHH5277_R3649
1907.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2706.7
Schmiedel sample id
TPM
Naive B-cell TPM: 2706.7
Samples: 91
Max TPM: 3730.7
Min TPM: 1374.5
B_CELL_NAIVE_1
3730.7
B_CELL_NAIVE_2
3512.6
B_CELL_NAIVE_3
3364.6
B_CELL_NAIVE_4
3281.2
B_CELL_NAIVE_5
3244.1
B_CELL_NAIVE_6
3201.8
B_CELL_NAIVE_7
3201.2
B_CELL_NAIVE_8
3178.6
B_CELL_NAIVE_9
3139.6
B_CELL_NAIVE_10
3135.4
B_CELL_NAIVE_11
3106.8
B_CELL_NAIVE_12
3106.2
B_CELL_NAIVE_13
3100.5
B_CELL_NAIVE_14
3088.4
B_CELL_NAIVE_15
3081.9
B_CELL_NAIVE_16
3060.6
B_CELL_NAIVE_17
3045.6
B_CELL_NAIVE_18
3039.8
B_CELL_NAIVE_19
3021.3
B_CELL_NAIVE_20
3021.2
B_CELL_NAIVE_21
2997.9
B_CELL_NAIVE_22
2981.4
B_CELL_NAIVE_23
2976.4
B_CELL_NAIVE_24
2967.2
B_CELL_NAIVE_25
2964.1
B_CELL_NAIVE_26
2959.8
B_CELL_NAIVE_27
2957.4
B_CELL_NAIVE_28
2938.8
B_CELL_NAIVE_29
2930.8
B_CELL_NAIVE_30
2912.7
B_CELL_NAIVE_31
2912.0
B_CELL_NAIVE_32
2886.9
B_CELL_NAIVE_33
2872.4
B_CELL_NAIVE_34
2860.5
B_CELL_NAIVE_35
2852.6
B_CELL_NAIVE_36
2848.7
B_CELL_NAIVE_37
2844.7
B_CELL_NAIVE_38
2843.8
B_CELL_NAIVE_39
2838.6
B_CELL_NAIVE_40
2837.9
B_CELL_NAIVE_41
2831.0
B_CELL_NAIVE_42
2824.1
B_CELL_NAIVE_43
2798.0
B_CELL_NAIVE_44
2791.5
B_CELL_NAIVE_45
2788.4
B_CELL_NAIVE_46
2765.0
B_CELL_NAIVE_47
2762.0
B_CELL_NAIVE_48
2748.4
B_CELL_NAIVE_49
2748.0
B_CELL_NAIVE_50
2746.8
B_CELL_NAIVE_51
2737.2
B_CELL_NAIVE_52
2731.3
B_CELL_NAIVE_53
2704.9
B_CELL_NAIVE_54
2652.1
B_CELL_NAIVE_55
2649.5
B_CELL_NAIVE_56
2637.3
B_CELL_NAIVE_57
2636.8
B_CELL_NAIVE_58
2630.5
B_CELL_NAIVE_59
2619.9
B_CELL_NAIVE_60
2614.1
B_CELL_NAIVE_61
2592.2
B_CELL_NAIVE_62
2591.7
B_CELL_NAIVE_63
2591.6
B_CELL_NAIVE_64
2584.0
B_CELL_NAIVE_65
2561.8
B_CELL_NAIVE_66
2559.7
B_CELL_NAIVE_67
2559.4
B_CELL_NAIVE_68
2555.0
B_CELL_NAIVE_69
2548.5
B_CELL_NAIVE_70
2531.4
B_CELL_NAIVE_71
2506.0
B_CELL_NAIVE_72
2501.7
B_CELL_NAIVE_73
2488.3
B_CELL_NAIVE_74
2484.5
B_CELL_NAIVE_75
2394.6
B_CELL_NAIVE_76
2385.3
B_CELL_NAIVE_77
2372.8
B_CELL_NAIVE_78
2366.6
B_CELL_NAIVE_79
2364.7
B_CELL_NAIVE_80
2251.3
B_CELL_NAIVE_81
2191.6
B_CELL_NAIVE_82
2189.4
B_CELL_NAIVE_83
2115.8
B_CELL_NAIVE_84
1999.8
B_CELL_NAIVE_85
1872.0
B_CELL_NAIVE_86
1853.3
B_CELL_NAIVE_87
1717.2
B_CELL_NAIVE_88
1671.1
B_CELL_NAIVE_89
1635.2
B_CELL_NAIVE_90
1633.7
B_CELL_NAIVE_91
1374.5
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