A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5579.6
nTPM
Monaco:
1120.2
nTPM
Schmiedel:
1597.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5579.6
HPA sample
nTPM
Classical monocyte nTPM: 5579.5
Samples: 6
Max nTPM: 11124.3
Min nTPM: 3332.6
P10809_1003
11124.3
P10809_1020
4458.9
P10809_1039
4409.1
P10809_1058
4940.3
P10809_1080
3332.6
P10809_1107
5212.0
Intermediate monocyte nTPM: 4773.6
Samples: 6
Max nTPM: 6731.4
Min nTPM: 3045.1
P10809_1004
3934.6
P10809_1023
5569.0
P10809_1042
4959.0
P10809_1061
3045.1
P10809_1081
4402.3
P10809_1108
6731.4
Non-classical monocyte nTPM: 4571.7
Samples: 5
Max nTPM: 6184.0
Min nTPM: 3063.8
P10809_1005
4641.0
P10809_1053
4657.0
P10809_1072
3063.8
P10809_1082
4312.5
P10809_1109
6184.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1120.2
Monaco sample
nTPM
Classical monocyte nTPM: 636.5
Samples: 4
Max nTPM: 914.1
Min nTPM: 417.7
RHH5313_R3680
914.1
RHH5221_R3593
514.8
RHH5250_R3622
417.7
RHH5279_R3651
699.5
Intermediate monocyte nTPM: 1120.2
Samples: 4
Max nTPM: 1330.7
Min nTPM: 666.6
RHH5314_R3681
1176.9
RHH5222_R3594
1330.7
RHH5251_R3623
1306.7
RHH5280_R3652
666.6
Non-classical monocyte nTPM: 890.8
Samples: 4
Max nTPM: 1313.9
Min nTPM: 494.0
RHH5315_R3682
1313.9
RHH5223_R3595
861.8
RHH5252_R3624
893.3
RHH5281_R3653
494.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1597.1
Schmiedel sample id
TPM
Classical monocyte TPM: 1572.6
Samples: 91
Max TPM: 2118.7
Min TPM: 1265.2
MONOCYTES_1
2118.7
MONOCYTES_2
1880.0
MONOCYTES_3
1850.2
MONOCYTES_4
1834.1
MONOCYTES_5
1829.6
MONOCYTES_6
1826.8
MONOCYTES_7
1800.7
MONOCYTES_8
1785.6
MONOCYTES_9
1766.5
MONOCYTES_10
1760.6
MONOCYTES_11
1757.7
MONOCYTES_12
1749.1
MONOCYTES_13
1728.9
MONOCYTES_14
1727.0
MONOCYTES_15
1715.4
MONOCYTES_16
1709.6
MONOCYTES_17
1685.0
MONOCYTES_18
1681.7
MONOCYTES_19
1678.5
MONOCYTES_20
1673.9
MONOCYTES_21
1670.2
MONOCYTES_22
1668.5
MONOCYTES_23
1663.6
MONOCYTES_24
1659.6
MONOCYTES_25
1654.3
MONOCYTES_26
1653.5
MONOCYTES_27
1649.0
MONOCYTES_28
1644.7
MONOCYTES_29
1642.0
MONOCYTES_30
1639.6
MONOCYTES_31
1633.3
MONOCYTES_32
1625.1
MONOCYTES_33
1623.4
MONOCYTES_34
1623.2
MONOCYTES_35
1619.7
MONOCYTES_36
1607.7
MONOCYTES_37
1607.5
MONOCYTES_38
1602.2
MONOCYTES_39
1601.8
MONOCYTES_40
1598.7
MONOCYTES_41
1596.3
MONOCYTES_42
1589.8
MONOCYTES_43
1581.0
MONOCYTES_44
1579.3
MONOCYTES_45
1578.2
MONOCYTES_46
1576.0
MONOCYTES_47
1573.7
MONOCYTES_48
1572.2
MONOCYTES_49
1568.4
MONOCYTES_50
1561.7
MONOCYTES_51
1559.4
MONOCYTES_52
1553.8
MONOCYTES_53
1553.2
MONOCYTES_54
1552.9
MONOCYTES_55
1548.2
MONOCYTES_56
1534.8
MONOCYTES_57
1534.3
MONOCYTES_58
1533.6
MONOCYTES_59
1524.4
MONOCYTES_60
1524.3
MONOCYTES_61
1520.5
MONOCYTES_62
1515.6
MONOCYTES_63
1511.6
MONOCYTES_64
1504.0
MONOCYTES_65
1503.2
MONOCYTES_66
1487.9
MONOCYTES_67
1479.8
MONOCYTES_68
1472.3
MONOCYTES_69
1468.2
MONOCYTES_70
1466.0
MONOCYTES_71
1460.4
MONOCYTES_72
1444.4
MONOCYTES_73
1428.0
MONOCYTES_74
1427.3
MONOCYTES_75
1416.6
MONOCYTES_76
1403.3
MONOCYTES_77
1401.6
MONOCYTES_78
1398.0
MONOCYTES_79
1395.3
MONOCYTES_80
1379.9
MONOCYTES_81
1377.4
MONOCYTES_82
1373.7
MONOCYTES_83
1371.3
MONOCYTES_84
1351.3
MONOCYTES_85
1330.7
MONOCYTES_86
1321.3
MONOCYTES_87
1309.8
MONOCYTES_88
1305.6
MONOCYTES_89
1291.8
MONOCYTES_90
1284.5
MONOCYTES_91
1265.2
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Non-classical monocyte TPM: 1597.1
Samples: 90
Max TPM: 1992.0
Min TPM: 1073.7
M2_1
1992.0
M2_2
1990.1
M2_3
1977.6
M2_4
1952.0
M2_5
1940.3
M2_6
1913.3
M2_7
1854.2
M2_8
1846.1
M2_9
1819.2
M2_10
1816.3
M2_11
1815.9
M2_12
1785.9
M2_13
1783.9
M2_14
1780.2
M2_15
1772.8
M2_16
1762.3
M2_17
1752.5
M2_18
1723.2
M2_19
1720.1
M2_20
1715.9
M2_21
1715.8
M2_22
1711.9
M2_23
1706.8
M2_24
1705.0
M2_25
1703.4
M2_26
1702.5
M2_27
1702.0
M2_28
1689.8
M2_29
1687.3
M2_30
1686.5
M2_31
1684.6
M2_32
1671.6
M2_33
1667.2
M2_34
1664.7
M2_35
1663.1
M2_36
1660.6
M2_37
1657.2
M2_38
1656.9
M2_39
1656.3
M2_40
1655.3
M2_41
1649.2
M2_42
1642.5
M2_43
1629.6
M2_44
1628.8
M2_45
1628.1
M2_46
1601.3
M2_47
1600.1
M2_48
1593.8
M2_49
1591.3
M2_50
1587.0
M2_51
1581.8
M2_52
1578.8
M2_53
1578.0
M2_54
1572.8
M2_55
1572.4
M2_56
1557.2
M2_57
1548.3
M2_58
1537.2
M2_59
1524.9
M2_60
1520.3
M2_61
1518.3
M2_62
1515.4
M2_63
1510.2
M2_64
1498.9
M2_65
1497.4
M2_66
1495.6
M2_67
1485.0
M2_68
1478.4
M2_69
1464.0
M2_70
1457.6
M2_71
1453.1
M2_72
1445.2
M2_73
1435.7
M2_74
1428.6
M2_75
1427.7
M2_76
1424.0
M2_77
1408.0
M2_78
1407.2
M2_79
1390.2
M2_80
1375.6
M2_81
1375.2
M2_82
1368.7
M2_83
1332.1
M2_84
1312.9
M2_85
1299.6
M2_86
1270.3
M2_87
1195.4
M2_88
1179.4
M2_89
1132.0
M2_90
1073.7
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