A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6854.9
nTPM
Monaco:
774.5
nTPM
Schmiedel:
2039.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6854.9
HPA sample
nTPM
NK-cell nTPM: 6854.9
Samples: 6
Max nTPM: 9190.1
Min nTPM: 3483.2
P10809_1013
6319.5
P10809_1033
9190.1
P10809_1052
7348.0
P10809_1071
7213.2
P10809_1093
3483.2
P10809_1103
7575.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
774.5
Monaco sample
nTPM
NK-cell nTPM: 774.5
Samples: 4
Max nTPM: 927.6
Min nTPM: 654.4
RHH5316_R3683
927.6
RHH5224_R3596
654.4
RHH5253_R3625
727.2
RHH5282_R3654
788.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2039.7
Schmiedel sample id
TPM
NK-cell TPM: 2039.7
Samples: 90
Max TPM: 3157.1
Min TPM: 1348.2
NK_1
3157.1
NK_2
2860.0
NK_3
2670.9
NK_4
2668.3
NK_5
2519.2
NK_6
2507.6
NK_7
2498.7
NK_8
2481.0
NK_9
2462.4
NK_10
2431.6
NK_11
2390.9
NK_12
2352.7
NK_13
2344.8
NK_14
2343.4
NK_15
2335.7
NK_16
2316.5
NK_17
2313.0
NK_18
2306.8
NK_19
2305.0
NK_20
2302.9
NK_21
2302.1
NK_22
2297.6
NK_23
2282.6
NK_24
2280.5
NK_25
2264.9
NK_26
2238.4
NK_27
2223.8
NK_28
2221.8
NK_29
2204.7
NK_30
2196.0
NK_31
2178.6
NK_32
2166.3
NK_33
2157.4
NK_34
2140.1
NK_35
2128.5
NK_36
2128.5
NK_37
2117.8
NK_38
2103.5
NK_39
2101.4
NK_40
2069.8
NK_41
2065.6
NK_42
2063.2
NK_43
2061.7
NK_44
2047.0
NK_45
2044.8
NK_46
2043.0
NK_47
2041.4
NK_48
2029.8
NK_49
2023.1
NK_50
2022.0
NK_51
2002.3
NK_52
1971.1
NK_53
1967.3
NK_54
1962.9
NK_55
1958.8
NK_56
1954.0
NK_57
1939.2
NK_58
1925.8
NK_59
1914.3
NK_60
1908.6
NK_61
1905.1
NK_62
1895.8
NK_63
1881.9
NK_64
1875.6
NK_65
1874.7
NK_66
1837.0
NK_67
1788.9
NK_68
1783.7
NK_69
1738.1
NK_70
1731.9
NK_71
1731.1
NK_72
1727.1
NK_73
1725.8
NK_74
1718.5
NK_75
1716.9
NK_76
1697.9
NK_77
1696.3
NK_78
1693.9
NK_79
1661.5
NK_80
1636.8
NK_81
1605.9
NK_82
1600.8
NK_83
1564.8
NK_84
1547.6
NK_85
1541.2
NK_86
1530.3
NK_87
1458.2
NK_88
1379.4
NK_89
1360.2
NK_90
1348.2
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