On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2093.3
nTPM
HPA Brain:
472.5
nTPM
GTEx:
2093.3
nTPM
FANTOM5:
102.0
Scaled Tags Per Million
Mouse:
0.4
nTPM
Rat:
2.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
472.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 415.5
2666
Male, age 74, left hemisphere
511.1
2586
Male, age 75, left hemisphere
479.5
1870
Female, age 42, unknown
465.1
2828
Female, age 72, unknown
418.0
2411
Female, age 72, unknown
412.0
1827
Male, age 72, unknown
403.6
2019
Male, age 18, unknown
390.0
1833
Male, age 53, unknown
375.0
1830
Male, age 51, unknown
369.0
2219
Male, age 76, both hemispheres
331.9
Dorsal raphe nucleus nTPM: 416.7
2298
Female, age 72, unknown
465.5
2750
Male, age 76, both hemispheres
450.9
2016
Female, age 72, unknown
440.4
1828
Male, age 53, unknown
386.3
2047
Male, age 72, unknown
340.6
Inferior colliculus nTPM: 387.2
1890
Male, age 53, unknown
433.2
2097
Female, age 72, unknown
404.1
2849
Male, age 72, unknown
373.9
1848
Female, age 42, unknown
337.7
Median raphe nucleus nTPM: 403.1
2220
Male, age 76, midline
403.1
Periaquaductal grey, anterior nTPM: 430.2
2502
Female, age 75, unknown
526.5
1795
Male, age 51, unknown
391.6
1947
Male, age 18, unknown
372.4
Periaquaductal grey, dorsal nTPM: 390.4
1840
Male, age 53, unknown
456.2
1831
Male, age 72, unknown
377.7
2464
Female, age 72, unknown
377.4
2850
Male, age 76, both hemispheres
350.3
Periaquaductal grey, lateral nTPM: 364.1
2053
Male, age 18, unknown
411.5
2140
Male, age 76, both hemispheres
380.2
2272
Male, age 74, both hemispheres
300.7
Pretectal area nTPM: 385.7
2316
Male, age 76, right hemisphere
456.3
2224
Female, age 72, unknown
419.3
1817
Female, age 42, unknown
414.6
2007
Male, age 72, unknown
410.6
2825
Male, age 18, unknown
402.0
1815
Male, age 53, unknown
400.2
1816
Male, age 51, unknown
370.3
1944
Female, age 72, unknown
356.9
2667
Female, age 75, unknown
354.3
2407
Male, age 75, both hemispheres
352.0
2273
Male, age 74, both hemispheres
305.7
Red nucleus nTPM: 458.9
2503
Female, age 72, unknown
558.3
1865
Male, age 51, unknown
520.4
1904
Male, age 53, unknown
517.4
1821
Female, age 72, unknown
476.7
2227
Male, age 72, unknown
473.2
2584
Male, age 75, left hemisphere
470.0
2769
Male, age 72, unknown
439.8
2588
Male, age 74, left hemisphere
436.3
2785
Male, age 18, unknown
431.6
2725
Female, age 75, unknown
431.0
1954
Female, age 42, unknown
393.1
2823
Male, age 76, right hemisphere
359.3
Substantia nigra nTPM: 472.5
1851
Male, age 51, unknown
595.6
2665
Male, age 74, both hemispheres
564.2
2699
Male, age 18, unknown
553.6
2241
Male, age 72, unknown
536.3
2409
Female, age 72, unknown
488.8
1916
Female, age 42, unknown
462.2
1889
Female, age 72, unknown
412.5
2590
Female, age 75, unknown
397.9
2583
Male, age 75, right hemisphere
366.9
1941
Male, age 53, unknown
346.9
Superior colliculus nTPM: 432.2
1913
Female, age 42, unknown
524.8
2587
Male, age 74, left hemisphere
515.4
2668
Female, age 75, unknown
463.2
1995
Male, age 72, unknown
456.7
1796
Male, age 53, unknown
415.7
2664
Male, age 75, both hemispheres
415.4
2087
Female, age 72, unknown
393.1
2261
Male, age 18, unknown
384.3
1839
Male, age 51, unknown
377.9
1895
Male, age 76, right hemisphere
376.0
Ventral tegmental area nTPM: 454.5
1915
Female, age 42, unknown
530.5
2223
Female, age 72, unknown
513.4
2021
Male, age 53, unknown
470.1
1942
Male, age 51, unknown
439.5
2410
Female, age 72, unknown
409.7
2218
Male, age 76, both hemispheres
363.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2093.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2093.3
Samples: 183
Max nTPM: 5107.9
Min nTPM: 679.9
Std nTPM: 835.6
Median nTPM: 1958.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
5107.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4908.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4887.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4648.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4481.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
4031.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3962.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
3864.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
3673.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3654.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3563.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
3466.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
3429.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
3281.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
3260.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3258.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
3228.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3211.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3169.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
3103.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3102.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3076.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
3030.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3009.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3008.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2982.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2977.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2961.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2930.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
2905.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
2863.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2845.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2804.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2770.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
2747.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2689.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2670.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2659.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2644.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2616.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2587.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2570.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
2564.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2533.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
2497.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2496.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2475.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2470.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
2459.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2432.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2420.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
2412.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2386.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2377.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2361.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
2359.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
2354.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2353.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2343.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2334.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2314.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2301.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2300.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2299.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2298.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2270.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2269.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
2265.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
2258.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2206.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
2199.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
2178.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2173.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2170.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2160.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2131.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2119.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2114.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2111.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2091.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2059.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2053.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2048.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
2046.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2040.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2029.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2026.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2019.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2003.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1994.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1978.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1958.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1945.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1933.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1931.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1919.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1890.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1866.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1859.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1858.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1844.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1833.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1829.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1820.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1817.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1797.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1783.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1768.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1754.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1750.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1739.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1733.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1710.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1699.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1689.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1648.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1636.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1628.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1627.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1625.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1622.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1620.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1597.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1578.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1578.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1576.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1552.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1539.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1536.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1536.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1526.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1525.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1521.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1515.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1509.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1503.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1497.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1496.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1493.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1486.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1476.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1452.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1451.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1442.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1426.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1419.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1403.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1401.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1381.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1374.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1371.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1368.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1361.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1352.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1348.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1338.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1334.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1287.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1275.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1269.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1264.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1242.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1218.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1218.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1216.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1189.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1182.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1175.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1148.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1131.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1055.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1054.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1031.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
992.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
953.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
953.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
941.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
940.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
928.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
917.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
861.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
704.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
679.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.4
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.3
Sample A
0.4
Sample B
0.5
Sample C
0.3
Sample D
0.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 2.3
Samples: 4
Max nTPM: 4.6
Min nTPM: 1.1
Sample A
1.1
Sample A
2.0
Sample A
1.4
Sample A
4.6
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The Human Protein Atlas project is funded
