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BETA
  • SUMMARY

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  • BRAIN

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  • RPS18
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:5657.9 nTPM
Monaco:1781.4 nTPM
Schmiedel:1946.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

5657.9
HPA sample nTPM
Memory B-cell
nTPM: 5657.9
Samples: 6

Max nTPM: 6364.5
Min nTPM: 5017.4
P10809_1017 5057.3
P10809_1025 6120.7
P10809_1044 5017.4
P10809_1063 6364.5
P10809_1092 5867.2
P10809_1105 5520.4
Naive B-cell
nTPM: 4536.4
Samples: 6

Max nTPM: 5410.6
Min nTPM: 4123.2
P10809_1011 4123.2
P10809_1029 4702.4
P10809_1048 5410.6
P10809_1067 4624.0
P10809_1091 4174.1
P10809_1104 4183.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1781.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1781.4
Samples: 4

Max nTPM: 3587.5
Min nTPM: 331.0
RHH5310_R3677 1616.4
RHH5218_R3590 331.0
RHH5247_R3619 3587.5
RHH5276_R3648 1590.7
Naive B-cell
nTPM: 1306.5
Samples: 4

Max nTPM: 2133.1
Min nTPM: 552.3
RHH5308_R3675 1581.4
RHH5216_R3588 552.3
RHH5245_R3617 2133.1
RHH5274_R3646 959.3
Non-switched memory B-cell
nTPM: 1368.8
Samples: 4

Max nTPM: 2040.9
Min nTPM: 582.2
RHH5309_R3676 2040.9
RHH5217_R3589 582.2
RHH5246_R3618 992.6
RHH5275_R3647 1859.4
Plasmablast
nTPM: 1295.4
Samples: 4

Max nTPM: 1646.8
Min nTPM: 708.0
RHH5312_R3679 1646.8
RHH5220_R3592 708.0
RHH5249_R3621 1437.5
RHH5278_R3650 1389.3
Switched memory B-cell
nTPM: 1137.1
Samples: 4

Max nTPM: 1751.0
Min nTPM: 651.4
RHH5311_R3678 1751.0
RHH5219_R3591 792.1
RHH5248_R3620 651.4
RHH5277_R3649 1353.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1946.0
Schmiedel sample id TPM
Naive B-cell
TPM: 1946.0
Samples: 91

Max TPM: 2541.0
Min TPM: 877.1
B_CELL_NAIVE_1 2541.0
B_CELL_NAIVE_2 2479.4
B_CELL_NAIVE_3 2391.6
B_CELL_NAIVE_4 2346.2
B_CELL_NAIVE_5 2329.2
B_CELL_NAIVE_6 2325.5
B_CELL_NAIVE_7 2323.1
B_CELL_NAIVE_8 2315.1
B_CELL_NAIVE_9 2312.7
B_CELL_NAIVE_10 2308.5
B_CELL_NAIVE_11 2297.5
B_CELL_NAIVE_12 2254.9
B_CELL_NAIVE_13 2243.8
B_CELL_NAIVE_14 2238.9
B_CELL_NAIVE_15 2234.3
B_CELL_NAIVE_16 2229.4
B_CELL_NAIVE_17 2227.8
B_CELL_NAIVE_18 2219.5
B_CELL_NAIVE_19 2210.8
B_CELL_NAIVE_20 2195.1
B_CELL_NAIVE_21 2195.0
B_CELL_NAIVE_22 2175.9
B_CELL_NAIVE_23 2168.4
B_CELL_NAIVE_24 2124.8
B_CELL_NAIVE_25 2113.0
B_CELL_NAIVE_26 2100.0
B_CELL_NAIVE_27 2098.7
B_CELL_NAIVE_28 2095.7
B_CELL_NAIVE_29 2075.2
B_CELL_NAIVE_30 2074.8
B_CELL_NAIVE_31 2071.9
B_CELL_NAIVE_32 2053.7
B_CELL_NAIVE_33 2053.6
B_CELL_NAIVE_34 2045.2
B_CELL_NAIVE_35 2045.2
B_CELL_NAIVE_36 2042.6
B_CELL_NAIVE_37 2029.6
B_CELL_NAIVE_38 2017.8
B_CELL_NAIVE_39 2010.8
B_CELL_NAIVE_40 2008.3
B_CELL_NAIVE_41 2006.2
B_CELL_NAIVE_42 2002.6
B_CELL_NAIVE_43 1997.6
B_CELL_NAIVE_44 1992.6
B_CELL_NAIVE_45 1989.9
B_CELL_NAIVE_46 1988.0
B_CELL_NAIVE_47 1987.0
B_CELL_NAIVE_48 1978.8
B_CELL_NAIVE_49 1951.6
B_CELL_NAIVE_50 1947.8
B_CELL_NAIVE_51 1947.1
B_CELL_NAIVE_52 1945.4
B_CELL_NAIVE_53 1942.9
B_CELL_NAIVE_54 1928.5
B_CELL_NAIVE_55 1925.6
B_CELL_NAIVE_56 1924.2
B_CELL_NAIVE_57 1908.2
B_CELL_NAIVE_58 1903.3
B_CELL_NAIVE_59 1903.0
B_CELL_NAIVE_60 1897.9
B_CELL_NAIVE_61 1894.5
B_CELL_NAIVE_62 1885.6
B_CELL_NAIVE_63 1883.6
B_CELL_NAIVE_64 1878.8
B_CELL_NAIVE_65 1874.9
B_CELL_NAIVE_66 1864.4
B_CELL_NAIVE_67 1857.6
B_CELL_NAIVE_68 1856.9
B_CELL_NAIVE_69 1849.8
B_CELL_NAIVE_70 1826.8
B_CELL_NAIVE_71 1826.6
B_CELL_NAIVE_72 1818.8
B_CELL_NAIVE_73 1809.5
B_CELL_NAIVE_74 1763.0
B_CELL_NAIVE_75 1761.8
B_CELL_NAIVE_76 1720.3
B_CELL_NAIVE_77 1717.3
B_CELL_NAIVE_78 1671.1
B_CELL_NAIVE_79 1667.7
B_CELL_NAIVE_80 1612.4
B_CELL_NAIVE_81 1546.4
B_CELL_NAIVE_82 1510.4
B_CELL_NAIVE_83 1466.3
B_CELL_NAIVE_84 1424.6
B_CELL_NAIVE_85 1396.8
B_CELL_NAIVE_86 1308.9
B_CELL_NAIVE_87 1298.8
B_CELL_NAIVE_88 1232.1
B_CELL_NAIVE_89 1216.6
B_CELL_NAIVE_90 1072.2
B_CELL_NAIVE_91 877.1
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