A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5657.9
nTPM
Monaco:
1781.4
nTPM
Schmiedel:
1946.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5657.9
HPA sample
nTPM
Memory B-cell nTPM: 5657.9
Samples: 6
Max nTPM: 6364.5
Min nTPM: 5017.4
P10809_1017
5057.3
P10809_1025
6120.7
P10809_1044
5017.4
P10809_1063
6364.5
P10809_1092
5867.2
P10809_1105
5520.4
Naive B-cell nTPM: 4536.4
Samples: 6
Max nTPM: 5410.6
Min nTPM: 4123.2
P10809_1011
4123.2
P10809_1029
4702.4
P10809_1048
5410.6
P10809_1067
4624.0
P10809_1091
4174.1
P10809_1104
4183.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1781.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1781.4
Samples: 4
Max nTPM: 3587.5
Min nTPM: 331.0
RHH5310_R3677
1616.4
RHH5218_R3590
331.0
RHH5247_R3619
3587.5
RHH5276_R3648
1590.7
Naive B-cell nTPM: 1306.5
Samples: 4
Max nTPM: 2133.1
Min nTPM: 552.3
RHH5308_R3675
1581.4
RHH5216_R3588
552.3
RHH5245_R3617
2133.1
RHH5274_R3646
959.3
Non-switched memory B-cell nTPM: 1368.8
Samples: 4
Max nTPM: 2040.9
Min nTPM: 582.2
RHH5309_R3676
2040.9
RHH5217_R3589
582.2
RHH5246_R3618
992.6
RHH5275_R3647
1859.4
Plasmablast nTPM: 1295.4
Samples: 4
Max nTPM: 1646.8
Min nTPM: 708.0
RHH5312_R3679
1646.8
RHH5220_R3592
708.0
RHH5249_R3621
1437.5
RHH5278_R3650
1389.3
Switched memory B-cell nTPM: 1137.1
Samples: 4
Max nTPM: 1751.0
Min nTPM: 651.4
RHH5311_R3678
1751.0
RHH5219_R3591
792.1
RHH5248_R3620
651.4
RHH5277_R3649
1353.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1946.0
Schmiedel sample id
TPM
Naive B-cell TPM: 1946.0
Samples: 91
Max TPM: 2541.0
Min TPM: 877.1
B_CELL_NAIVE_1
2541.0
B_CELL_NAIVE_2
2479.4
B_CELL_NAIVE_3
2391.6
B_CELL_NAIVE_4
2346.2
B_CELL_NAIVE_5
2329.2
B_CELL_NAIVE_6
2325.5
B_CELL_NAIVE_7
2323.1
B_CELL_NAIVE_8
2315.1
B_CELL_NAIVE_9
2312.7
B_CELL_NAIVE_10
2308.5
B_CELL_NAIVE_11
2297.5
B_CELL_NAIVE_12
2254.9
B_CELL_NAIVE_13
2243.8
B_CELL_NAIVE_14
2238.9
B_CELL_NAIVE_15
2234.3
B_CELL_NAIVE_16
2229.4
B_CELL_NAIVE_17
2227.8
B_CELL_NAIVE_18
2219.5
B_CELL_NAIVE_19
2210.8
B_CELL_NAIVE_20
2195.1
B_CELL_NAIVE_21
2195.0
B_CELL_NAIVE_22
2175.9
B_CELL_NAIVE_23
2168.4
B_CELL_NAIVE_24
2124.8
B_CELL_NAIVE_25
2113.0
B_CELL_NAIVE_26
2100.0
B_CELL_NAIVE_27
2098.7
B_CELL_NAIVE_28
2095.7
B_CELL_NAIVE_29
2075.2
B_CELL_NAIVE_30
2074.8
B_CELL_NAIVE_31
2071.9
B_CELL_NAIVE_32
2053.7
B_CELL_NAIVE_33
2053.6
B_CELL_NAIVE_34
2045.2
B_CELL_NAIVE_35
2045.2
B_CELL_NAIVE_36
2042.6
B_CELL_NAIVE_37
2029.6
B_CELL_NAIVE_38
2017.8
B_CELL_NAIVE_39
2010.8
B_CELL_NAIVE_40
2008.3
B_CELL_NAIVE_41
2006.2
B_CELL_NAIVE_42
2002.6
B_CELL_NAIVE_43
1997.6
B_CELL_NAIVE_44
1992.6
B_CELL_NAIVE_45
1989.9
B_CELL_NAIVE_46
1988.0
B_CELL_NAIVE_47
1987.0
B_CELL_NAIVE_48
1978.8
B_CELL_NAIVE_49
1951.6
B_CELL_NAIVE_50
1947.8
B_CELL_NAIVE_51
1947.1
B_CELL_NAIVE_52
1945.4
B_CELL_NAIVE_53
1942.9
B_CELL_NAIVE_54
1928.5
B_CELL_NAIVE_55
1925.6
B_CELL_NAIVE_56
1924.2
B_CELL_NAIVE_57
1908.2
B_CELL_NAIVE_58
1903.3
B_CELL_NAIVE_59
1903.0
B_CELL_NAIVE_60
1897.9
B_CELL_NAIVE_61
1894.5
B_CELL_NAIVE_62
1885.6
B_CELL_NAIVE_63
1883.6
B_CELL_NAIVE_64
1878.8
B_CELL_NAIVE_65
1874.9
B_CELL_NAIVE_66
1864.4
B_CELL_NAIVE_67
1857.6
B_CELL_NAIVE_68
1856.9
B_CELL_NAIVE_69
1849.8
B_CELL_NAIVE_70
1826.8
B_CELL_NAIVE_71
1826.6
B_CELL_NAIVE_72
1818.8
B_CELL_NAIVE_73
1809.5
B_CELL_NAIVE_74
1763.0
B_CELL_NAIVE_75
1761.8
B_CELL_NAIVE_76
1720.3
B_CELL_NAIVE_77
1717.3
B_CELL_NAIVE_78
1671.1
B_CELL_NAIVE_79
1667.7
B_CELL_NAIVE_80
1612.4
B_CELL_NAIVE_81
1546.4
B_CELL_NAIVE_82
1510.4
B_CELL_NAIVE_83
1466.3
B_CELL_NAIVE_84
1424.6
B_CELL_NAIVE_85
1396.8
B_CELL_NAIVE_86
1308.9
B_CELL_NAIVE_87
1298.8
B_CELL_NAIVE_88
1232.1
B_CELL_NAIVE_89
1216.6
B_CELL_NAIVE_90
1072.2
B_CELL_NAIVE_91
877.1
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