A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1885.8
nTPM
Monaco:
670.6
nTPM
Schmiedel:
960.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1885.8
HPA sample
nTPM
Classical monocyte nTPM: 1885.8
Samples: 6
Max nTPM: 3406.0
Min nTPM: 1350.4
P10809_1003
3406.0
P10809_1020
1682.2
P10809_1039
1446.2
P10809_1058
1711.4
P10809_1080
1350.4
P10809_1107
1718.4
Intermediate monocyte nTPM: 1657.7
Samples: 6
Max nTPM: 2082.1
Min nTPM: 1027.1
P10809_1004
1815.1
P10809_1023
1983.2
P10809_1042
1660.2
P10809_1061
1027.1
P10809_1081
1378.6
P10809_1108
2082.1
Non-classical monocyte nTPM: 1272.2
Samples: 5
Max nTPM: 1653.0
Min nTPM: 896.2
P10809_1005
1642.2
P10809_1053
1146.8
P10809_1072
896.2
P10809_1082
1022.9
P10809_1109
1653.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
670.6
Monaco sample
nTPM
Classical monocyte nTPM: 410.5
Samples: 4
Max nTPM: 569.6
Min nTPM: 295.2
RHH5313_R3680
569.6
RHH5221_R3593
357.5
RHH5250_R3622
295.2
RHH5279_R3651
419.7
Intermediate monocyte nTPM: 670.6
Samples: 4
Max nTPM: 868.2
Min nTPM: 436.3
RHH5314_R3681
753.0
RHH5222_R3594
868.2
RHH5251_R3623
624.8
RHH5280_R3652
436.3
Non-classical monocyte nTPM: 451.7
Samples: 4
Max nTPM: 645.2
Min nTPM: 236.2
RHH5315_R3682
645.2
RHH5223_R3595
474.4
RHH5252_R3624
450.8
RHH5281_R3653
236.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
960.6
Schmiedel sample id
TPM
Classical monocyte TPM: 960.6
Samples: 91
Max TPM: 1202.4
Min TPM: 647.3
MONOCYTES_1
1202.4
MONOCYTES_2
1159.5
MONOCYTES_3
1127.5
MONOCYTES_4
1125.4
MONOCYTES_5
1111.5
MONOCYTES_6
1099.4
MONOCYTES_7
1092.4
MONOCYTES_8
1087.2
MONOCYTES_9
1079.8
MONOCYTES_10
1074.1
MONOCYTES_11
1071.0
MONOCYTES_12
1070.6
MONOCYTES_13
1056.2
MONOCYTES_14
1054.0
MONOCYTES_15
1046.9
MONOCYTES_16
1045.4
MONOCYTES_17
1044.5
MONOCYTES_18
1044.3
MONOCYTES_19
1037.6
MONOCYTES_20
1036.0
MONOCYTES_21
1035.8
MONOCYTES_22
1033.0
MONOCYTES_23
1031.0
MONOCYTES_24
1024.9
MONOCYTES_25
1021.6
MONOCYTES_26
1014.9
MONOCYTES_27
1009.7
MONOCYTES_28
1008.5
MONOCYTES_29
1006.9
MONOCYTES_30
1004.9
MONOCYTES_31
1003.2
MONOCYTES_32
1002.7
MONOCYTES_33
1002.5
MONOCYTES_34
1001.5
MONOCYTES_35
997.6
MONOCYTES_36
989.1
MONOCYTES_37
985.7
MONOCYTES_38
985.3
MONOCYTES_39
984.7
MONOCYTES_40
982.8
MONOCYTES_41
982.5
MONOCYTES_42
981.6
MONOCYTES_43
980.5
MONOCYTES_44
978.3
MONOCYTES_45
976.1
MONOCYTES_46
971.9
MONOCYTES_47
971.5
MONOCYTES_48
970.9
MONOCYTES_49
968.2
MONOCYTES_50
968.1
MONOCYTES_51
966.9
MONOCYTES_52
966.4
MONOCYTES_53
964.6
MONOCYTES_54
959.6
MONOCYTES_55
958.2
MONOCYTES_56
956.0
MONOCYTES_57
954.4
MONOCYTES_58
948.3
MONOCYTES_59
941.8
MONOCYTES_60
939.5
MONOCYTES_61
932.7
MONOCYTES_62
929.9
MONOCYTES_63
928.1
MONOCYTES_64
924.8
MONOCYTES_65
923.9
MONOCYTES_66
923.4
MONOCYTES_67
922.3
MONOCYTES_68
919.9
MONOCYTES_69
918.3
MONOCYTES_70
916.7
MONOCYTES_71
905.4
MONOCYTES_72
899.7
MONOCYTES_73
899.2
MONOCYTES_74
898.2
MONOCYTES_75
889.0
MONOCYTES_76
872.3
MONOCYTES_77
871.3
MONOCYTES_78
852.5
MONOCYTES_79
840.2
MONOCYTES_80
831.4
MONOCYTES_81
830.7
MONOCYTES_82
829.1
MONOCYTES_83
825.0
MONOCYTES_84
792.9
MONOCYTES_85
786.1
MONOCYTES_86
762.8
MONOCYTES_87
739.8
MONOCYTES_88
737.1
MONOCYTES_89
719.3
MONOCYTES_90
648.0
MONOCYTES_91
647.3
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Non-classical monocyte TPM: 749.3
Samples: 90
Max TPM: 994.7
Min TPM: 495.2
M2_1
994.7
M2_2
930.3
M2_3
925.4
M2_4
910.4
M2_5
876.8
M2_6
875.5
M2_7
874.5
M2_8
860.0
M2_9
851.4
M2_10
845.2
M2_11
843.9
M2_12
838.1
M2_13
837.2
M2_14
833.5
M2_15
829.3
M2_16
829.3
M2_17
826.2
M2_18
821.7
M2_19
821.3
M2_20
819.6
M2_21
817.7
M2_22
816.8
M2_23
816.7
M2_24
810.5
M2_25
810.2
M2_26
808.5
M2_27
808.0
M2_28
800.3
M2_29
799.5
M2_30
797.2
M2_31
795.3
M2_32
790.1
M2_33
787.3
M2_34
786.4
M2_35
785.9
M2_36
780.7
M2_37
780.5
M2_38
779.6
M2_39
777.6
M2_40
777.0
M2_41
766.2
M2_42
765.2
M2_43
765.0
M2_44
762.7
M2_45
762.6
M2_46
759.7
M2_47
757.5
M2_48
750.2
M2_49
747.1
M2_50
746.9
M2_51
744.8
M2_52
742.8
M2_53
741.8
M2_54
739.6
M2_55
735.5
M2_56
729.0
M2_57
724.6
M2_58
718.3
M2_59
715.6
M2_60
715.4
M2_61
714.8
M2_62
711.5
M2_63
711.4
M2_64
710.5
M2_65
707.8
M2_66
707.4
M2_67
705.5
M2_68
701.5
M2_69
700.8
M2_70
696.0
M2_71
688.3
M2_72
683.7
M2_73
683.2
M2_74
674.9
M2_75
672.8
M2_76
666.4
M2_77
665.2
M2_78
662.8
M2_79
655.1
M2_80
640.1
M2_81
635.4
M2_82
629.5
M2_83
592.9
M2_84
568.3
M2_85
567.8
M2_86
561.3
M2_87
534.3
M2_88
528.5
M2_89
499.9
M2_90
495.2
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