A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3183.7
nTPM
Monaco:
459.4
nTPM
Schmiedel:
1089.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3183.7
HPA sample
nTPM
NK-cell nTPM: 3183.7
Samples: 6
Max nTPM: 4830.9
Min nTPM: 1604.8
P10809_1013
2644.0
P10809_1033
4830.9
P10809_1052
2875.6
P10809_1071
3730.5
P10809_1093
1604.8
P10809_1103
3416.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
459.4
Monaco sample
nTPM
NK-cell nTPM: 459.4
Samples: 4
Max nTPM: 568.1
Min nTPM: 365.8
RHH5316_R3683
568.1
RHH5224_R3596
365.8
RHH5253_R3625
439.9
RHH5282_R3654
463.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1089.4
Schmiedel sample id
TPM
NK-cell TPM: 1089.4
Samples: 90
Max TPM: 1579.3
Min TPM: 705.6
NK_1
1579.3
NK_2
1531.2
NK_3
1478.3
NK_4
1473.0
NK_5
1410.0
NK_6
1367.5
NK_7
1335.8
NK_8
1331.3
NK_9
1323.5
NK_10
1277.5
NK_11
1256.6
NK_12
1244.9
NK_13
1243.9
NK_14
1242.8
NK_15
1234.4
NK_16
1228.7
NK_17
1211.6
NK_18
1210.6
NK_19
1205.8
NK_20
1204.0
NK_21
1202.4
NK_22
1198.3
NK_23
1192.6
NK_24
1188.7
NK_25
1186.1
NK_26
1185.7
NK_27
1169.6
NK_28
1168.7
NK_29
1165.8
NK_30
1164.1
NK_31
1147.6
NK_32
1139.2
NK_33
1136.5
NK_34
1136.4
NK_35
1118.5
NK_36
1111.4
NK_37
1108.4
NK_38
1107.8
NK_39
1103.7
NK_40
1099.4
NK_41
1094.8
NK_42
1091.7
NK_43
1083.6
NK_44
1083.1
NK_45
1082.3
NK_46
1081.5
NK_47
1080.5
NK_48
1071.5
NK_49
1068.8
NK_50
1061.6
NK_51
1059.4
NK_52
1058.9
NK_53
1044.4
NK_54
1024.7
NK_55
1024.2
NK_56
1023.6
NK_57
1023.2
NK_58
1019.0
NK_59
1015.2
NK_60
1013.7
NK_61
1011.4
NK_62
1003.8
NK_63
1001.2
NK_64
1000.4
NK_65
995.4
NK_66
994.2
NK_67
991.7
NK_68
984.1
NK_69
980.9
NK_70
977.4
NK_71
975.2
NK_72
970.1
NK_73
965.3
NK_74
964.8
NK_75
964.0
NK_76
948.9
NK_77
948.5
NK_78
934.3
NK_79
928.1
NK_80
910.0
NK_81
897.1
NK_82
893.4
NK_83
884.5
NK_84
860.4
NK_85
830.0
NK_86
816.8
NK_87
743.8
NK_88
727.1
NK_89
710.1
NK_90
705.6
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