A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.3
nTPM
Monaco:
26.0
nTPM
Schmiedel:
107.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
HPA sample
nTPM
Memory B-cell nTPM: 105.3
Samples: 6
Max nTPM: 144.9
Min nTPM: 53.1
P10809_1017
53.1
P10809_1025
144.9
P10809_1044
72.8
P10809_1063
97.9
P10809_1092
125.1
P10809_1105
138.0
Naive B-cell nTPM: 90.9
Samples: 6
Max nTPM: 132.2
Min nTPM: 33.4
P10809_1011
33.4
P10809_1029
132.2
P10809_1048
69.9
P10809_1067
102.9
P10809_1091
89.4
P10809_1104
117.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.2
Samples: 4
Max nTPM: 39.4
Min nTPM: 13.1
RHH5310_R3677
24.5
RHH5218_R3590
13.1
RHH5247_R3619
15.7
RHH5276_R3648
39.4
Naive B-cell nTPM: 20.7
Samples: 4
Max nTPM: 30.5
Min nTPM: 9.0
RHH5308_R3675
30.5
RHH5216_R3588
9.0
RHH5245_R3617
26.3
RHH5274_R3646
16.8
Non-switched memory B-cell nTPM: 18.4
Samples: 4
Max nTPM: 33.4
Min nTPM: 2.3
RHH5309_R3676
22.8
RHH5217_R3589
15.2
RHH5246_R3618
2.3
RHH5275_R3647
33.4
Plasmablast nTPM: 12.4
Samples: 4
Max nTPM: 15.3
Min nTPM: 8.7
RHH5312_R3679
14.8
RHH5220_R3592
8.7
RHH5249_R3621
15.3
RHH5278_R3650
10.9
Switched memory B-cell nTPM: 26.0
Samples: 4
Max nTPM: 31.1
Min nTPM: 18.0
RHH5311_R3678
28.4
RHH5219_R3591
26.5
RHH5248_R3620
18.0
RHH5277_R3649
31.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.3
Schmiedel sample id
TPM
Naive B-cell TPM: 107.3
Samples: 91
Max TPM: 230.7
Min TPM: 14.3
B_CELL_NAIVE_1
230.7
B_CELL_NAIVE_2
206.8
B_CELL_NAIVE_3
200.7
B_CELL_NAIVE_4
200.7
B_CELL_NAIVE_5
198.1
B_CELL_NAIVE_6
196.9
B_CELL_NAIVE_7
194.5
B_CELL_NAIVE_8
193.0
B_CELL_NAIVE_9
191.8
B_CELL_NAIVE_10
190.6
B_CELL_NAIVE_11
187.9
B_CELL_NAIVE_12
181.5
B_CELL_NAIVE_13
181.4
B_CELL_NAIVE_14
178.1
B_CELL_NAIVE_15
174.1
B_CELL_NAIVE_16
172.7
B_CELL_NAIVE_17
156.8
B_CELL_NAIVE_18
152.5
B_CELL_NAIVE_19
151.3
B_CELL_NAIVE_20
150.7
B_CELL_NAIVE_21
150.0
B_CELL_NAIVE_22
140.5
B_CELL_NAIVE_23
140.3
B_CELL_NAIVE_24
136.6
B_CELL_NAIVE_25
136.3
B_CELL_NAIVE_26
134.5
B_CELL_NAIVE_27
132.4
B_CELL_NAIVE_28
132.1
B_CELL_NAIVE_29
132.0
B_CELL_NAIVE_30
131.3
B_CELL_NAIVE_31
131.0
B_CELL_NAIVE_32
130.9
B_CELL_NAIVE_33
129.2
B_CELL_NAIVE_34
129.1
B_CELL_NAIVE_35
128.5
B_CELL_NAIVE_36
128.4
B_CELL_NAIVE_37
127.8
B_CELL_NAIVE_38
125.6
B_CELL_NAIVE_39
124.7
B_CELL_NAIVE_40
116.8
B_CELL_NAIVE_41
116.3
B_CELL_NAIVE_42
114.9
B_CELL_NAIVE_43
114.9
B_CELL_NAIVE_44
110.3
B_CELL_NAIVE_45
104.6
B_CELL_NAIVE_46
103.5
B_CELL_NAIVE_47
103.2
B_CELL_NAIVE_48
98.8
B_CELL_NAIVE_49
97.6
B_CELL_NAIVE_50
97.4
B_CELL_NAIVE_51
96.6
B_CELL_NAIVE_52
96.4
B_CELL_NAIVE_53
96.4
B_CELL_NAIVE_54
95.7
B_CELL_NAIVE_55
95.2
B_CELL_NAIVE_56
94.2
B_CELL_NAIVE_57
92.7
B_CELL_NAIVE_58
87.0
B_CELL_NAIVE_59
85.4
B_CELL_NAIVE_60
80.3
B_CELL_NAIVE_61
74.0
B_CELL_NAIVE_62
73.7
B_CELL_NAIVE_63
73.0
B_CELL_NAIVE_64
72.2
B_CELL_NAIVE_65
70.5
B_CELL_NAIVE_66
69.3
B_CELL_NAIVE_67
65.9
B_CELL_NAIVE_68
64.0
B_CELL_NAIVE_69
63.0
B_CELL_NAIVE_70
59.0
B_CELL_NAIVE_71
57.4
B_CELL_NAIVE_72
54.9
B_CELL_NAIVE_73
54.3
B_CELL_NAIVE_74
52.7
B_CELL_NAIVE_75
51.2
B_CELL_NAIVE_76
48.5
B_CELL_NAIVE_77
45.5
B_CELL_NAIVE_78
44.3
B_CELL_NAIVE_79
42.7
B_CELL_NAIVE_80
40.0
B_CELL_NAIVE_81
37.4
B_CELL_NAIVE_82
34.7
B_CELL_NAIVE_83
33.8
B_CELL_NAIVE_84
31.2
B_CELL_NAIVE_85
30.5
B_CELL_NAIVE_86
27.9
B_CELL_NAIVE_87
21.5
B_CELL_NAIVE_88
17.3
B_CELL_NAIVE_89
16.6
B_CELL_NAIVE_90
16.1
B_CELL_NAIVE_91
14.3
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The Human Protein Atlas project is funded
