A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.6
nTPM
Monaco:
10.2
nTPM
Schmiedel:
106.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.6
HPA sample
nTPM
NK-cell nTPM: 44.6
Samples: 6
Max nTPM: 76.6
Min nTPM: 5.1
P10809_1013
5.1
P10809_1033
76.6
P10809_1052
61.6
P10809_1071
36.1
P10809_1093
16.9
P10809_1103
71.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.2
Monaco sample
nTPM
NK-cell nTPM: 10.2
Samples: 4
Max nTPM: 17.2
Min nTPM: 4.7
RHH5316_R3683
17.2
RHH5224_R3596
4.7
RHH5253_R3625
11.7
RHH5282_R3654
7.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.5
Schmiedel sample id
TPM
NK-cell TPM: 106.5
Samples: 90
Max TPM: 192.6
Min TPM: 23.4
NK_1
192.6
NK_2
191.3
NK_3
190.7
NK_4
181.0
NK_5
177.3
NK_6
173.3
NK_7
170.6
NK_8
170.5
NK_9
159.9
NK_10
159.9
NK_11
157.6
NK_12
157.3
NK_13
154.1
NK_14
149.4
NK_15
147.7
NK_16
145.7
NK_17
144.6
NK_18
142.5
NK_19
141.0
NK_20
139.6
NK_21
139.6
NK_22
139.2
NK_23
136.9
NK_24
136.8
NK_25
136.8
NK_26
136.4
NK_27
135.1
NK_28
134.6
NK_29
131.3
NK_30
130.0
NK_31
128.3
NK_32
125.4
NK_33
124.8
NK_34
124.0
NK_35
123.9
NK_36
117.4
NK_37
117.2
NK_38
115.8
NK_39
115.2
NK_40
115.1
NK_41
112.2
NK_42
111.4
NK_43
110.4
NK_44
108.9
NK_45
108.7
NK_46
107.2
NK_47
105.1
NK_48
104.8
NK_49
104.4
NK_50
103.2
NK_51
97.8
NK_52
97.0
NK_53
97.0
NK_54
93.5
NK_55
92.9
NK_56
91.5
NK_57
88.7
NK_58
88.7
NK_59
88.6
NK_60
87.9
NK_61
86.5
NK_62
82.3
NK_63
80.1
NK_64
79.7
NK_65
79.2
NK_66
78.3
NK_67
75.4
NK_68
74.0
NK_69
73.2
NK_70
72.1
NK_71
72.1
NK_72
69.0
NK_73
65.4
NK_74
65.0
NK_75
64.8
NK_76
58.4
NK_77
57.2
NK_78
56.4
NK_79
53.8
NK_80
53.0
NK_81
51.6
NK_82
49.8
NK_83
44.4
NK_84
44.2
NK_85
42.2
NK_86
41.2
NK_87
32.7
NK_88
26.4
NK_89
26.2
NK_90
23.4
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