A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.6
nTPM
Monaco:
14.5
nTPM
Schmiedel:
115.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.6
HPA sample
nTPM
Classical monocyte nTPM: 61.6
Samples: 6
Max nTPM: 102.6
Min nTPM: 40.0
P10809_1003
102.6
P10809_1020
53.8
P10809_1039
44.3
P10809_1058
40.0
P10809_1080
43.4
P10809_1107
85.3
Intermediate monocyte nTPM: 39.2
Samples: 6
Max nTPM: 74.3
Min nTPM: 21.6
P10809_1004
25.0
P10809_1023
58.1
P10809_1042
21.6
P10809_1061
24.2
P10809_1081
31.9
P10809_1108
74.3
Non-classical monocyte nTPM: 36.4
Samples: 5
Max nTPM: 54.0
Min nTPM: 21.0
P10809_1005
31.2
P10809_1053
29.5
P10809_1072
46.4
P10809_1082
21.0
P10809_1109
54.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.5
Monaco sample
nTPM
Classical monocyte nTPM: 13.2
Samples: 4
Max nTPM: 18.8
Min nTPM: 4.0
RHH5313_R3680
18.8
RHH5221_R3593
4.0
RHH5250_R3622
13.2
RHH5279_R3651
16.7
Intermediate monocyte nTPM: 14.5
Samples: 4
Max nTPM: 20.8
Min nTPM: 9.8
RHH5314_R3681
16.3
RHH5222_R3594
11.2
RHH5251_R3623
20.8
RHH5280_R3652
9.8
Non-classical monocyte nTPM: 13.7
Samples: 4
Max nTPM: 22.5
Min nTPM: 6.2
RHH5315_R3682
22.5
RHH5223_R3595
6.2
RHH5252_R3624
11.2
RHH5281_R3653
15.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.6
Schmiedel sample id
TPM
Classical monocyte TPM: 115.6
Samples: 91
Max TPM: 219.5
Min TPM: 44.7
MONOCYTES_1
219.5
MONOCYTES_2
204.8
MONOCYTES_3
198.4
MONOCYTES_4
193.5
MONOCYTES_5
190.7
MONOCYTES_6
186.8
MONOCYTES_7
185.3
MONOCYTES_8
176.3
MONOCYTES_9
173.7
MONOCYTES_10
173.2
MONOCYTES_11
171.8
MONOCYTES_12
168.4
MONOCYTES_13
168.4
MONOCYTES_14
166.4
MONOCYTES_15
163.4
MONOCYTES_16
162.7
MONOCYTES_17
162.0
MONOCYTES_18
158.2
MONOCYTES_19
157.5
MONOCYTES_20
157.4
MONOCYTES_21
157.2
MONOCYTES_22
153.9
MONOCYTES_23
153.1
MONOCYTES_24
152.2
MONOCYTES_25
149.2
MONOCYTES_26
146.5
MONOCYTES_27
145.4
MONOCYTES_28
142.8
MONOCYTES_29
140.6
MONOCYTES_30
138.1
MONOCYTES_31
132.5
MONOCYTES_32
130.6
MONOCYTES_33
130.6
MONOCYTES_34
129.8
MONOCYTES_35
128.1
MONOCYTES_36
126.2
MONOCYTES_37
123.7
MONOCYTES_38
123.4
MONOCYTES_39
121.6
MONOCYTES_40
121.3
MONOCYTES_41
118.8
MONOCYTES_42
117.1
MONOCYTES_43
116.7
MONOCYTES_44
115.7
MONOCYTES_45
112.7
MONOCYTES_46
107.7
MONOCYTES_47
106.2
MONOCYTES_48
105.6
MONOCYTES_49
102.1
MONOCYTES_50
100.5
MONOCYTES_51
100.3
MONOCYTES_52
100.3
MONOCYTES_53
99.6
MONOCYTES_54
96.9
MONOCYTES_55
96.0
MONOCYTES_56
95.9
MONOCYTES_57
94.5
MONOCYTES_58
93.8
MONOCYTES_59
92.2
MONOCYTES_60
92.1
MONOCYTES_61
91.1
MONOCYTES_62
91.0
MONOCYTES_63
89.1
MONOCYTES_64
88.0
MONOCYTES_65
86.1
MONOCYTES_66
84.5
MONOCYTES_67
84.0
MONOCYTES_68
82.5
MONOCYTES_69
81.4
MONOCYTES_70
78.0
MONOCYTES_71
77.6
MONOCYTES_72
75.1
MONOCYTES_73
74.8
MONOCYTES_74
73.1
MONOCYTES_75
72.4
MONOCYTES_76
71.8
MONOCYTES_77
70.9
MONOCYTES_78
70.6
MONOCYTES_79
62.9
MONOCYTES_80
61.5
MONOCYTES_81
61.4
MONOCYTES_82
60.7
MONOCYTES_83
57.5
MONOCYTES_84
57.5
MONOCYTES_85
57.4
MONOCYTES_86
56.5
MONOCYTES_87
56.0
MONOCYTES_88
55.9
MONOCYTES_89
50.2
MONOCYTES_90
46.5
MONOCYTES_91
44.7
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Non-classical monocyte TPM: 65.0
Samples: 90
Max TPM: 179.1
Min TPM: 11.3
M2_1
179.1
M2_2
139.2
M2_3
134.4
M2_4
127.4
M2_5
125.8
M2_6
122.9
M2_7
114.8
M2_8
113.0
M2_9
111.1
M2_10
109.7
M2_11
109.3
M2_12
107.7
M2_13
107.4
M2_14
102.8
M2_15
100.8
M2_16
97.4
M2_17
97.2
M2_18
95.7
M2_19
95.6
M2_20
93.4
M2_21
90.8
M2_22
86.2
M2_23
86.0
M2_24
82.8
M2_25
80.8
M2_26
79.3
M2_27
78.8
M2_28
78.1
M2_29
77.3
M2_30
77.2
M2_31
76.0
M2_32
75.6
M2_33
73.7
M2_34
72.8
M2_35
70.8
M2_36
70.5
M2_37
69.2
M2_38
68.8
M2_39
68.5
M2_40
67.6
M2_41
67.6
M2_42
66.3
M2_43
65.2
M2_44
65.0
M2_45
63.8
M2_46
63.7
M2_47
62.3
M2_48
61.7
M2_49
61.3
M2_50
60.1
M2_51
54.5
M2_52
53.5
M2_53
53.4
M2_54
52.7
M2_55
49.7
M2_56
49.7
M2_57
49.5
M2_58
49.2
M2_59
48.7
M2_60
48.7
M2_61
47.5
M2_62
47.1
M2_63
46.5
M2_64
43.4
M2_65
37.5
M2_66
36.9
M2_67
36.7
M2_68
36.0
M2_69
35.2
M2_70
34.7
M2_71
34.7
M2_72
33.0
M2_73
31.3
M2_74
30.9
M2_75
29.3
M2_76
28.6
M2_77
28.3
M2_78
28.1
M2_79
26.7
M2_80
25.9
M2_81
24.4
M2_82
24.3
M2_83
23.3
M2_84
20.9
M2_85
20.8
M2_86
20.5
M2_87
20.2
M2_88
14.2
M2_89
13.6
M2_90
11.3
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