A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
0.3
nTPM
Schmiedel:
97.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Memory B-cell nTPM: 1.6
Samples: 6
Max nTPM: 3.4
Min nTPM: 0.0
P10809_1017
3.4
P10809_1025
1.0
P10809_1044
0.0
P10809_1063
0.8
P10809_1092
2.2
P10809_1105
2.4
Naive B-cell nTPM: 2.1
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.0
P10809_1011
3.7
P10809_1029
0.7
P10809_1048
0.0
P10809_1067
1.9
P10809_1091
2.7
P10809_1104
3.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5310_R3677
0.0
RHH5218_R3590
0.0
RHH5247_R3619
0.0
RHH5276_R3648
0.0
Naive B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5308_R3675
0.0
RHH5216_R3588
0.0
RHH5245_R3617
0.0
RHH5274_R3646
0.0
Non-switched memory B-cell nTPM: 0.4
Samples: 4
Max nTPM: 1.4
Min nTPM: 0.0
RHH5309_R3676
0.0
RHH5217_R3589
1.4
RHH5246_R3618
0.0
RHH5275_R3647
0.0
Plasmablast nTPM: 0.2
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.6
Switched memory B-cell nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
0.0
RHH5248_R3620
0.0
RHH5277_R3649
0.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.8
Schmiedel sample id
TPM
Naive B-cell TPM: 97.8
Samples: 91
Max TPM: 152.2
Min TPM: 38.0
B_CELL_NAIVE_1
152.2
B_CELL_NAIVE_2
139.0
B_CELL_NAIVE_3
134.9
B_CELL_NAIVE_4
134.7
B_CELL_NAIVE_5
132.5
B_CELL_NAIVE_6
131.1
B_CELL_NAIVE_7
130.5
B_CELL_NAIVE_8
129.0
B_CELL_NAIVE_9
128.5
B_CELL_NAIVE_10
128.5
B_CELL_NAIVE_11
127.1
B_CELL_NAIVE_12
126.3
B_CELL_NAIVE_13
126.3
B_CELL_NAIVE_14
123.8
B_CELL_NAIVE_15
121.9
B_CELL_NAIVE_16
120.8
B_CELL_NAIVE_17
120.6
B_CELL_NAIVE_18
120.4
B_CELL_NAIVE_19
119.4
B_CELL_NAIVE_20
118.0
B_CELL_NAIVE_21
116.6
B_CELL_NAIVE_22
114.6
B_CELL_NAIVE_23
114.4
B_CELL_NAIVE_24
114.1
B_CELL_NAIVE_25
113.7
B_CELL_NAIVE_26
113.7
B_CELL_NAIVE_27
113.5
B_CELL_NAIVE_28
112.1
B_CELL_NAIVE_29
111.9
B_CELL_NAIVE_30
110.5
B_CELL_NAIVE_31
110.0
B_CELL_NAIVE_32
108.4
B_CELL_NAIVE_33
107.3
B_CELL_NAIVE_34
107.2
B_CELL_NAIVE_35
106.8
B_CELL_NAIVE_36
106.6
B_CELL_NAIVE_37
106.4
B_CELL_NAIVE_38
106.3
B_CELL_NAIVE_39
105.6
B_CELL_NAIVE_40
104.6
B_CELL_NAIVE_41
104.5
B_CELL_NAIVE_42
104.4
B_CELL_NAIVE_43
104.4
B_CELL_NAIVE_44
103.8
B_CELL_NAIVE_45
103.7
B_CELL_NAIVE_46
103.4
B_CELL_NAIVE_47
102.6
B_CELL_NAIVE_48
102.5
B_CELL_NAIVE_49
102.4
B_CELL_NAIVE_50
102.0
B_CELL_NAIVE_51
99.0
B_CELL_NAIVE_52
98.6
B_CELL_NAIVE_53
98.3
B_CELL_NAIVE_54
96.1
B_CELL_NAIVE_55
95.9
B_CELL_NAIVE_56
95.6
B_CELL_NAIVE_57
95.4
B_CELL_NAIVE_58
93.9
B_CELL_NAIVE_59
92.9
B_CELL_NAIVE_60
91.8
B_CELL_NAIVE_61
91.4
B_CELL_NAIVE_62
91.2
B_CELL_NAIVE_63
91.2
B_CELL_NAIVE_64
90.7
B_CELL_NAIVE_65
90.3
B_CELL_NAIVE_66
86.0
B_CELL_NAIVE_67
84.6
B_CELL_NAIVE_68
83.2
B_CELL_NAIVE_69
81.7
B_CELL_NAIVE_70
78.4
B_CELL_NAIVE_71
78.4
B_CELL_NAIVE_72
78.2
B_CELL_NAIVE_73
75.2
B_CELL_NAIVE_74
72.8
B_CELL_NAIVE_75
72.1
B_CELL_NAIVE_76
69.9
B_CELL_NAIVE_77
69.8
B_CELL_NAIVE_78
66.3
B_CELL_NAIVE_79
66.3
B_CELL_NAIVE_80
65.6
B_CELL_NAIVE_81
64.9
B_CELL_NAIVE_82
59.7
B_CELL_NAIVE_83
56.9
B_CELL_NAIVE_84
52.4
B_CELL_NAIVE_85
52.1
B_CELL_NAIVE_86
51.9
B_CELL_NAIVE_87
51.8
B_CELL_NAIVE_88
47.6
B_CELL_NAIVE_89
43.1
B_CELL_NAIVE_90
39.4
B_CELL_NAIVE_91
38.0
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