A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
0.4
nTPM
Schmiedel:
93.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
NK-cell nTPM: 2.4
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.0
P10809_1013
4.0
P10809_1033
3.8
P10809_1052
1.8
P10809_1071
1.2
P10809_1093
0.0
P10809_1103
3.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
Monaco sample
nTPM
NK-cell nTPM: 0.4
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.0
RHH5316_R3683
0.0
RHH5224_R3596
0.0
RHH5253_R3625
1.6
RHH5282_R3654
0.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.5
Schmiedel sample id
TPM
NK-cell TPM: 93.5
Samples: 90
Max TPM: 137.1
Min TPM: 47.3
NK_1
137.1
NK_2
131.4
NK_3
122.5
NK_4
120.2
NK_5
118.0
NK_6
116.8
NK_7
116.1
NK_8
115.6
NK_9
115.2
NK_10
115.1
NK_11
114.8
NK_12
114.5
NK_13
114.0
NK_14
113.2
NK_15
112.9
NK_16
111.5
NK_17
110.1
NK_18
108.6
NK_19
108.5
NK_20
108.4
NK_21
108.1
NK_22
108.0
NK_23
107.9
NK_24
107.4
NK_25
106.4
NK_26
106.2
NK_27
105.6
NK_28
105.4
NK_29
105.0
NK_30
104.7
NK_31
104.7
NK_32
104.6
NK_33
104.4
NK_34
104.2
NK_35
103.7
NK_36
103.1
NK_37
102.3
NK_38
102.3
NK_39
101.3
NK_40
100.1
NK_41
97.6
NK_42
96.3
NK_43
96.2
NK_44
95.0
NK_45
94.9
NK_46
94.5
NK_47
93.9
NK_48
93.2
NK_49
92.2
NK_50
91.2
NK_51
91.0
NK_52
90.1
NK_53
89.6
NK_54
89.5
NK_55
88.1
NK_56
87.7
NK_57
87.4
NK_58
87.0
NK_59
86.3
NK_60
86.0
NK_61
84.7
NK_62
84.3
NK_63
83.8
NK_64
83.6
NK_65
83.6
NK_66
83.2
NK_67
80.2
NK_68
79.9
NK_69
79.3
NK_70
78.6
NK_71
78.5
NK_72
78.4
NK_73
78.3
NK_74
78.2
NK_75
75.9
NK_76
74.5
NK_77
74.1
NK_78
74.0
NK_79
72.5
NK_80
71.6
NK_81
68.2
NK_82
66.4
NK_83
65.8
NK_84
63.5
NK_85
60.9
NK_86
58.4
NK_87
58.1
NK_88
52.1
NK_89
50.3
NK_90
47.3
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