A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.2
nTPM
Monaco:
0.0
nTPM
Schmiedel:
70.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
HPA sample
nTPM
Classical monocyte nTPM: 4.2
Samples: 6
Max nTPM: 5.4
Min nTPM: 2.7
P10809_1003
5.4
P10809_1020
5.0
P10809_1039
4.3
P10809_1058
3.3
P10809_1080
2.7
P10809_1107
4.7
Intermediate monocyte nTPM: 3.1
Samples: 6
Max nTPM: 3.9
Min nTPM: 2.1
P10809_1004
2.9
P10809_1023
2.1
P10809_1042
3.9
P10809_1061
2.7
P10809_1081
3.7
P10809_1108
3.1
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.2
Min nTPM: 0.0
P10809_1005
2.2
P10809_1053
1.2
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
1.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
Monaco sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
0.0
RHH5250_R3622
0.0
RHH5279_R3651
0.0
Intermediate monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5314_R3681
0.0
RHH5222_R3594
0.0
RHH5251_R3623
0.0
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
0.0
RHH5252_R3624
0.0
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.9
Schmiedel sample id
TPM
Classical monocyte TPM: 70.9
Samples: 91
Max TPM: 101.2
Min TPM: 41.4
MONOCYTES_1
101.2
MONOCYTES_2
92.4
MONOCYTES_3
91.6
MONOCYTES_4
91.5
MONOCYTES_5
89.8
MONOCYTES_6
89.4
MONOCYTES_7
88.3
MONOCYTES_8
87.3
MONOCYTES_9
85.8
MONOCYTES_10
85.7
MONOCYTES_11
83.7
MONOCYTES_12
83.4
MONOCYTES_13
82.9
MONOCYTES_14
82.9
MONOCYTES_15
82.2
MONOCYTES_16
81.9
MONOCYTES_17
81.4
MONOCYTES_18
81.0
MONOCYTES_19
80.9
MONOCYTES_20
80.9
MONOCYTES_21
80.6
MONOCYTES_22
80.6
MONOCYTES_23
79.8
MONOCYTES_24
79.7
MONOCYTES_25
79.6
MONOCYTES_26
78.3
MONOCYTES_27
78.3
MONOCYTES_28
78.2
MONOCYTES_29
78.2
MONOCYTES_30
77.9
MONOCYTES_31
77.6
MONOCYTES_32
77.3
MONOCYTES_33
77.3
MONOCYTES_34
77.2
MONOCYTES_35
76.5
MONOCYTES_36
76.0
MONOCYTES_37
75.4
MONOCYTES_38
75.1
MONOCYTES_39
74.7
MONOCYTES_40
74.2
MONOCYTES_41
74.0
MONOCYTES_42
73.9
MONOCYTES_43
73.9
MONOCYTES_44
73.1
MONOCYTES_45
72.9
MONOCYTES_46
71.6
MONOCYTES_47
70.9
MONOCYTES_48
70.4
MONOCYTES_49
70.4
MONOCYTES_50
69.3
MONOCYTES_51
69.2
MONOCYTES_52
69.1
MONOCYTES_53
69.1
MONOCYTES_54
69.0
MONOCYTES_55
69.0
MONOCYTES_56
68.4
MONOCYTES_57
68.1
MONOCYTES_58
68.0
MONOCYTES_59
67.3
MONOCYTES_60
67.3
MONOCYTES_61
67.0
MONOCYTES_62
66.8
MONOCYTES_63
66.8
MONOCYTES_64
66.6
MONOCYTES_65
64.9
MONOCYTES_66
64.5
MONOCYTES_67
64.5
MONOCYTES_68
64.3
MONOCYTES_69
63.2
MONOCYTES_70
62.9
MONOCYTES_71
62.6
MONOCYTES_72
61.7
MONOCYTES_73
61.2
MONOCYTES_74
61.2
MONOCYTES_75
60.0
MONOCYTES_76
57.9
MONOCYTES_77
56.4
MONOCYTES_78
54.2
MONOCYTES_79
54.1
MONOCYTES_80
53.3
MONOCYTES_81
53.2
MONOCYTES_82
52.9
MONOCYTES_83
51.7
MONOCYTES_84
51.7
MONOCYTES_85
50.9
MONOCYTES_86
50.7
MONOCYTES_87
50.4
MONOCYTES_88
46.9
MONOCYTES_89
45.3
MONOCYTES_90
44.5
MONOCYTES_91
41.4
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Non-classical monocyte TPM: 49.6
Samples: 90
Max TPM: 71.2
Min TPM: 24.5
M2_1
71.2
M2_2
66.0
M2_3
65.7
M2_4
65.6
M2_5
65.0
M2_6
63.7
M2_7
63.5
M2_8
63.2
M2_9
63.0
M2_10
62.9
M2_11
62.4
M2_12
62.4
M2_13
61.8
M2_14
61.8
M2_15
61.2
M2_16
60.8
M2_17
60.3
M2_18
60.2
M2_19
59.8
M2_20
59.7
M2_21
59.7
M2_22
58.6
M2_23
58.5
M2_24
58.5
M2_25
58.3
M2_26
57.4
M2_27
57.1
M2_28
57.1
M2_29
57.0
M2_30
56.6
M2_31
56.2
M2_32
55.4
M2_33
54.4
M2_34
54.1
M2_35
53.9
M2_36
53.8
M2_37
53.5
M2_38
53.2
M2_39
52.9
M2_40
52.2
M2_41
52.0
M2_42
51.9
M2_43
51.7
M2_44
51.2
M2_45
51.2
M2_46
50.3
M2_47
49.9
M2_48
49.1
M2_49
48.9
M2_50
48.6
M2_51
48.6
M2_52
47.8
M2_53
47.6
M2_54
47.4
M2_55
47.4
M2_56
47.1
M2_57
47.0
M2_58
46.6
M2_59
46.5
M2_60
46.1
M2_61
45.2
M2_62
45.2
M2_63
44.6
M2_64
44.5
M2_65
43.9
M2_66
43.8
M2_67
43.4
M2_68
42.8
M2_69
42.6
M2_70
42.6
M2_71
39.9
M2_72
38.7
M2_73
38.3
M2_74
37.2
M2_75
36.7
M2_76
36.5
M2_77
36.1
M2_78
36.1
M2_79
35.9
M2_80
35.5
M2_81
34.9
M2_82
32.2
M2_83
32.2
M2_84
31.9
M2_85
30.5
M2_86
30.3
M2_87
29.9
M2_88
26.2
M2_89
25.8
M2_90
24.5
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