A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.8
nTPM
Monaco:
118.8
nTPM
Schmiedel:
42.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
HPA sample
nTPM
Memory B-cell nTPM: 21.4
Samples: 6
Max nTPM: 39.5
Min nTPM: 4.5
P10809_1017
39.5
P10809_1025
26.4
P10809_1044
4.5
P10809_1063
21.9
P10809_1092
12.3
P10809_1105
23.5
Naive B-cell nTPM: 21.9
Samples: 6
Max nTPM: 38.3
Min nTPM: 7.4
P10809_1011
38.3
P10809_1029
22.1
P10809_1048
11.9
P10809_1067
7.4
P10809_1091
28.9
P10809_1104
22.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 113.8
Samples: 4
Max nTPM: 128.9
Min nTPM: 106.2
RHH5310_R3677
106.2
RHH5218_R3590
109.0
RHH5247_R3619
111.1
RHH5276_R3648
128.9
Naive B-cell nTPM: 110.8
Samples: 4
Max nTPM: 122.2
Min nTPM: 99.8
RHH5308_R3675
99.8
RHH5216_R3588
106.3
RHH5245_R3617
122.2
RHH5274_R3646
114.8
Non-switched memory B-cell nTPM: 118.8
Samples: 4
Max nTPM: 125.7
Min nTPM: 110.0
RHH5309_R3676
110.0
RHH5217_R3589
122.2
RHH5246_R3618
125.7
RHH5275_R3647
117.4
Plasmablast nTPM: 117.5
Samples: 4
Max nTPM: 127.0
Min nTPM: 108.1
RHH5312_R3679
108.1
RHH5220_R3592
126.7
RHH5249_R3621
108.3
RHH5278_R3650
127.0
Switched memory B-cell nTPM: 117.9
Samples: 4
Max nTPM: 147.3
Min nTPM: 99.2
RHH5311_R3678
117.0
RHH5219_R3591
108.0
RHH5248_R3620
147.3
RHH5277_R3649
99.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.6
Schmiedel sample id
TPM
Naive B-cell TPM: 42.6
Samples: 91
Max TPM: 63.1
Min TPM: 20.9
B_CELL_NAIVE_1
63.1
B_CELL_NAIVE_2
60.0
B_CELL_NAIVE_3
56.9
B_CELL_NAIVE_4
54.9
B_CELL_NAIVE_5
54.6
B_CELL_NAIVE_6
54.3
B_CELL_NAIVE_7
54.1
B_CELL_NAIVE_8
53.9
B_CELL_NAIVE_9
52.9
B_CELL_NAIVE_10
52.3
B_CELL_NAIVE_11
52.2
B_CELL_NAIVE_12
52.1
B_CELL_NAIVE_13
50.7
B_CELL_NAIVE_14
50.6
B_CELL_NAIVE_15
50.6
B_CELL_NAIVE_16
50.0
B_CELL_NAIVE_17
49.9
B_CELL_NAIVE_18
49.8
B_CELL_NAIVE_19
49.6
B_CELL_NAIVE_20
49.6
B_CELL_NAIVE_21
48.2
B_CELL_NAIVE_22
48.1
B_CELL_NAIVE_23
48.0
B_CELL_NAIVE_24
46.8
B_CELL_NAIVE_25
46.8
B_CELL_NAIVE_26
46.6
B_CELL_NAIVE_27
46.3
B_CELL_NAIVE_28
45.8
B_CELL_NAIVE_29
45.7
B_CELL_NAIVE_30
45.6
B_CELL_NAIVE_31
45.6
B_CELL_NAIVE_32
45.0
B_CELL_NAIVE_33
44.5
B_CELL_NAIVE_34
44.2
B_CELL_NAIVE_35
44.2
B_CELL_NAIVE_36
43.9
B_CELL_NAIVE_37
43.7
B_CELL_NAIVE_38
43.6
B_CELL_NAIVE_39
43.3
B_CELL_NAIVE_40
43.2
B_CELL_NAIVE_41
43.1
B_CELL_NAIVE_42
43.0
B_CELL_NAIVE_43
42.7
B_CELL_NAIVE_44
42.5
B_CELL_NAIVE_45
42.3
B_CELL_NAIVE_46
42.1
B_CELL_NAIVE_47
41.5
B_CELL_NAIVE_48
41.3
B_CELL_NAIVE_49
41.3
B_CELL_NAIVE_50
41.2
B_CELL_NAIVE_51
41.2
B_CELL_NAIVE_52
41.1
B_CELL_NAIVE_53
41.0
B_CELL_NAIVE_54
40.8
B_CELL_NAIVE_55
40.4
B_CELL_NAIVE_56
40.2
B_CELL_NAIVE_57
40.2
B_CELL_NAIVE_58
40.1
B_CELL_NAIVE_59
39.9
B_CELL_NAIVE_60
39.5
B_CELL_NAIVE_61
39.4
B_CELL_NAIVE_62
39.3
B_CELL_NAIVE_63
38.9
B_CELL_NAIVE_64
38.6
B_CELL_NAIVE_65
38.5
B_CELL_NAIVE_66
38.3
B_CELL_NAIVE_67
38.3
B_CELL_NAIVE_68
38.2
B_CELL_NAIVE_69
37.9
B_CELL_NAIVE_70
37.8
B_CELL_NAIVE_71
37.6
B_CELL_NAIVE_72
36.9
B_CELL_NAIVE_73
36.8
B_CELL_NAIVE_74
36.7
B_CELL_NAIVE_75
36.5
B_CELL_NAIVE_76
36.2
B_CELL_NAIVE_77
36.0
B_CELL_NAIVE_78
36.0
B_CELL_NAIVE_79
35.8
B_CELL_NAIVE_80
35.3
B_CELL_NAIVE_81
34.9
B_CELL_NAIVE_82
34.0
B_CELL_NAIVE_83
34.0
B_CELL_NAIVE_84
33.8
B_CELL_NAIVE_85
32.0
B_CELL_NAIVE_86
30.9
B_CELL_NAIVE_87
30.8
B_CELL_NAIVE_88
30.7
B_CELL_NAIVE_89
27.3
B_CELL_NAIVE_90
22.8
B_CELL_NAIVE_91
20.9
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The Human Protein Atlas project is funded
