A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.7
nTPM
Monaco:
134.8
nTPM
Schmiedel:
47.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.7
HPA sample
nTPM
NK-cell nTPM: 21.7
Samples: 6
Max nTPM: 32.6
Min nTPM: 9.0
P10809_1013
32.6
P10809_1033
15.5
P10809_1052
31.1
P10809_1071
25.0
P10809_1093
9.0
P10809_1103
17.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.8
Monaco sample
nTPM
NK-cell nTPM: 134.9
Samples: 4
Max nTPM: 151.8
Min nTPM: 94.3
RHH5316_R3683
94.3
RHH5224_R3596
151.8
RHH5253_R3625
148.9
RHH5282_R3654
144.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
Schmiedel sample id
TPM
NK-cell TPM: 47.2
Samples: 90
Max TPM: 72.1
Min TPM: 26.4
NK_1
72.1
NK_2
71.0
NK_3
68.7
NK_4
66.7
NK_5
66.2
NK_6
63.4
NK_7
62.1
NK_8
61.8
NK_9
61.0
NK_10
60.1
NK_11
59.3
NK_12
58.3
NK_13
56.9
NK_14
56.8
NK_15
56.6
NK_16
55.9
NK_17
55.8
NK_18
55.2
NK_19
55.1
NK_20
55.0
NK_21
54.6
NK_22
54.5
NK_23
53.2
NK_24
52.9
NK_25
52.5
NK_26
52.2
NK_27
52.0
NK_28
51.5
NK_29
51.1
NK_30
50.7
NK_31
50.6
NK_32
50.5
NK_33
50.4
NK_34
49.9
NK_35
49.5
NK_36
49.1
NK_37
48.9
NK_38
48.8
NK_39
48.6
NK_40
48.1
NK_41
48.0
NK_42
47.9
NK_43
47.7
NK_44
47.7
NK_45
47.1
NK_46
47.1
NK_47
46.1
NK_48
45.6
NK_49
45.0
NK_50
44.3
NK_51
44.2
NK_52
44.2
NK_53
44.2
NK_54
43.7
NK_55
43.5
NK_56
42.9
NK_57
42.1
NK_58
42.1
NK_59
42.1
NK_60
41.3
NK_61
41.3
NK_62
41.2
NK_63
40.8
NK_64
40.7
NK_65
40.5
NK_66
40.2
NK_67
39.8
NK_68
39.7
NK_69
39.6
NK_70
39.3
NK_71
39.2
NK_72
39.1
NK_73
39.1
NK_74
39.0
NK_75
38.8
NK_76
38.3
NK_77
38.3
NK_78
37.6
NK_79
37.5
NK_80
37.1
NK_81
36.6
NK_82
35.9
NK_83
35.9
NK_84
34.3
NK_85
33.4
NK_86
33.3
NK_87
32.5
NK_88
32.1
NK_89
29.2
NK_90
26.4
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