A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.4
nTPM
Monaco:
110.6
nTPM
Schmiedel:
29.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.4
HPA sample
nTPM
Classical monocyte nTPM: 24.3
Samples: 6
Max nTPM: 49.8
Min nTPM: 12.8
P10809_1003
49.8
P10809_1020
25.5
P10809_1039
12.8
P10809_1058
18.1
P10809_1080
18.4
P10809_1107
21.5
Intermediate monocyte nTPM: 26.1
Samples: 6
Max nTPM: 39.2
Min nTPM: 18.4
P10809_1004
39.2
P10809_1023
18.4
P10809_1042
21.3
P10809_1061
25.1
P10809_1081
21.2
P10809_1108
31.4
Non-classical monocyte nTPM: 27.4
Samples: 5
Max nTPM: 45.7
Min nTPM: 12.5
P10809_1005
40.3
P10809_1053
18.4
P10809_1072
45.7
P10809_1082
12.5
P10809_1109
19.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.6
Monaco sample
nTPM
Classical monocyte nTPM: 110.6
Samples: 4
Max nTPM: 126.3
Min nTPM: 89.0
RHH5313_R3680
89.0
RHH5221_R3593
126.3
RHH5250_R3622
119.6
RHH5279_R3651
107.6
Intermediate monocyte nTPM: 107.9
Samples: 4
Max nTPM: 125.5
Min nTPM: 93.3
RHH5314_R3681
93.3
RHH5222_R3594
125.5
RHH5251_R3623
117.1
RHH5280_R3652
95.8
Non-classical monocyte nTPM: 88.0
Samples: 4
Max nTPM: 103.8
Min nTPM: 77.4
RHH5315_R3682
83.1
RHH5223_R3595
77.4
RHH5252_R3624
103.8
RHH5281_R3653
87.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Schmiedel sample id
TPM
Classical monocyte TPM: 29.6
Samples: 91
Max TPM: 49.5
Min TPM: 14.5
MONOCYTES_1
49.5
MONOCYTES_2
43.2
MONOCYTES_3
40.7
MONOCYTES_4
40.1
MONOCYTES_5
39.4
MONOCYTES_6
39.1
MONOCYTES_7
38.3
MONOCYTES_8
37.7
MONOCYTES_9
37.3
MONOCYTES_10
37.0
MONOCYTES_11
36.3
MONOCYTES_12
36.1
MONOCYTES_13
35.9
MONOCYTES_14
35.8
MONOCYTES_15
35.6
MONOCYTES_16
35.6
MONOCYTES_17
35.4
MONOCYTES_18
35.4
MONOCYTES_19
34.7
MONOCYTES_20
34.6
MONOCYTES_21
34.5
MONOCYTES_22
34.2
MONOCYTES_23
34.0
MONOCYTES_24
33.9
MONOCYTES_25
33.8
MONOCYTES_26
33.6
MONOCYTES_27
33.4
MONOCYTES_28
33.4
MONOCYTES_29
32.9
MONOCYTES_30
32.6
MONOCYTES_31
32.6
MONOCYTES_32
32.4
MONOCYTES_33
32.0
MONOCYTES_34
31.9
MONOCYTES_35
31.7
MONOCYTES_36
31.6
MONOCYTES_37
31.4
MONOCYTES_38
31.2
MONOCYTES_39
30.8
MONOCYTES_40
30.7
MONOCYTES_41
30.2
MONOCYTES_42
30.0
MONOCYTES_43
30.0
MONOCYTES_44
29.8
MONOCYTES_45
29.6
MONOCYTES_46
29.4
MONOCYTES_47
29.2
MONOCYTES_48
29.0
MONOCYTES_49
28.9
MONOCYTES_50
28.9
MONOCYTES_51
28.7
MONOCYTES_52
28.3
MONOCYTES_53
28.2
MONOCYTES_54
28.1
MONOCYTES_55
27.5
MONOCYTES_56
27.4
MONOCYTES_57
27.0
MONOCYTES_58
26.9
MONOCYTES_59
26.9
MONOCYTES_60
26.5
MONOCYTES_61
26.5
MONOCYTES_62
26.5
MONOCYTES_63
26.3
MONOCYTES_64
26.1
MONOCYTES_65
26.0
MONOCYTES_66
25.6
MONOCYTES_67
25.6
MONOCYTES_68
25.6
MONOCYTES_69
25.3
MONOCYTES_70
25.2
MONOCYTES_71
25.2
MONOCYTES_72
25.1
MONOCYTES_73
25.0
MONOCYTES_74
24.9
MONOCYTES_75
24.6
MONOCYTES_76
24.5
MONOCYTES_77
23.7
MONOCYTES_78
23.3
MONOCYTES_79
22.5
MONOCYTES_80
22.3
MONOCYTES_81
21.5
MONOCYTES_82
21.2
MONOCYTES_83
21.0
MONOCYTES_84
20.6
MONOCYTES_85
20.6
MONOCYTES_86
19.6
MONOCYTES_87
19.0
MONOCYTES_88
18.1
MONOCYTES_89
17.8
MONOCYTES_90
15.6
MONOCYTES_91
14.5
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Non-classical monocyte TPM: 22.5
Samples: 90
Max TPM: 32.0
Min TPM: 12.5
M2_1
32.0
M2_2
32.0
M2_3
30.5
M2_4
30.5
M2_5
30.3
M2_6
30.1
M2_7
30.0
M2_8
29.6
M2_9
29.4
M2_10
29.0
M2_11
28.4
M2_12
28.3
M2_13
28.1
M2_14
28.1
M2_15
28.0
M2_16
28.0
M2_17
28.0
M2_18
27.9
M2_19
27.7
M2_20
27.4
M2_21
26.8
M2_22
26.6
M2_23
26.3
M2_24
25.3
M2_25
24.8
M2_26
24.5
M2_27
24.4
M2_28
24.3
M2_29
24.2
M2_30
24.0
M2_31
23.6
M2_32
23.5
M2_33
23.3
M2_34
23.2
M2_35
23.1
M2_36
23.1
M2_37
23.1
M2_38
23.0
M2_39
23.0
M2_40
22.8
M2_41
22.8
M2_42
22.7
M2_43
22.7
M2_44
22.5
M2_45
22.4
M2_46
22.4
M2_47
22.3
M2_48
22.1
M2_49
22.1
M2_50
21.7
M2_51
21.5
M2_52
21.3
M2_53
21.1
M2_54
21.0
M2_55
20.9
M2_56
20.8
M2_57
20.5
M2_58
20.5
M2_59
20.3
M2_60
20.2
M2_61
20.2
M2_62
20.2
M2_63
20.0
M2_64
19.6
M2_65
19.3
M2_66
19.2
M2_67
19.2
M2_68
19.1
M2_69
18.9
M2_70
18.8
M2_71
18.4
M2_72
18.3
M2_73
18.3
M2_74
18.2
M2_75
17.8
M2_76
17.7
M2_77
17.3
M2_78
17.2
M2_79
17.1
M2_80
17.0
M2_81
16.6
M2_82
16.2
M2_83
16.2
M2_84
16.0
M2_85
15.9
M2_86
15.8
M2_87
15.8
M2_88
14.6
M2_89
14.1
M2_90
12.5
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