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  • PCDHGC3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.5 nTPM
HPA Brain:152.9 nTPM
GTEx:128.5 nTPM
FANTOM5:192.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 143.0
2565 Male, age 75, midline 197.5
2048 Male, age 55, midline 152.4
2816 Male, age 47, midline 124.9
1981 Female, age 72, midline 123.3
2194 Female, age 79, both hemispheres 116.9
Cervical spinal cord, dorsal horn
nTPM: 133.9
2721 Male, age 90, both hemispheres 211.5
1877 Male, age 55, unknown 128.9
2296 Male, age 66, both hemispheres 128.8
2173 Female, age 72, unknown 124.9
2069 Male, age 47, both hemispheres 114.9
2297 Male, age 75, both hemispheres 94.3
Cervical spinal cord, ventral horn
nTPM: 152.9
2809 Male, age 90, both hemispheres 228.0
2098 Female, age 72, unknown 155.5
2480 Male, age 75, both hemispheres 151.3
2295 Male, age 66, both hemispheres 150.2
2820 Female, age 79, both hemispheres 117.3
2068 Male, age 55, unknown 115.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.5
Samples: 204

Max nTPM: 369.5
Min nTPM: 54.0
Std nTPM: 43.6
Median nTPM: 123.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 369.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 282.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 232.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 229.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 224.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 218.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 218.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 212.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 207.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 207.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 205.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 201.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 198.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 198.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 198.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 195.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 191.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 188.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 184.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 178.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 176.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 176.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 176.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 174.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 173.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 170.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 169.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 168.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 167.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 167.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 166.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 165.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 164.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 164.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 163.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 161.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 160.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 160.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 157.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 157.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 155.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 155.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 154.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 150.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 149.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 149.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 149.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 148.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 146.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 146.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 145.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 145.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 144.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 144.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 142.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 142.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 140.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 140.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 139.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 139.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 138.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 138.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 137.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 137.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 137.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 135.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 135.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 134.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 134.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 132.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 132.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 132.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 130.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 130.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 130.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 129.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 129.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 129.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 129.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 129.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 129.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 129.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 128.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 127.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 126.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 125.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 124.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 124.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 123.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 123.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 123.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 122.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 121.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 120.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 120.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 118.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 118.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 117.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 117.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 117.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 115.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 115.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 114.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 113.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 113.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 113.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 113.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 112.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 112.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 111.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 111.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 111.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 111.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 110.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 110.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 110.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 109.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 108.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 108.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 107.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 105.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 105.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 105.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 105.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 104.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 102.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 102.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 101.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 99.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 99.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 99.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 98.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 98.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 97.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 97.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 96.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 96.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 95.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 93.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 92.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 91.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 91.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 91.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 91.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 91.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 88.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 88.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 88.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 87.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 87.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 86.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 85.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 85.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 85.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 84.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 82.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 81.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 80.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 80.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 79.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 79.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 78.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 76.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 70.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 70.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 67.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 65.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 65.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 63.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 62.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 61.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 54.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 192.4
FF:10159-103A6 76 years, female 239.0
FF:10181-103D1 60 years, female 145.7

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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