MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.4 nTPM
HPA Brain:49.2 nTPM
GTEx:41.4 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:70.0 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
2019 Male, age 18, unknown 49.3
2586 Male, age 75, left hemisphere 47.8
1827 Male, age 72, unknown 46.4
2411 Female, age 72, unknown 46.3
2828 Female, age 72, unknown 46.3
1870 Female, age 42, unknown 45.4
2666 Male, age 74, left hemisphere 44.5
1833 Male, age 53, unknown 41.2
1830 Male, age 51, unknown 40.8
2219 Male, age 76, both hemispheres 39.5
Dorsal raphe nucleus
nTPM: 46.8
2298 Female, age 72, unknown 59.6
2047 Male, age 72, unknown 45.8
1828 Male, age 53, unknown 44.7
2016 Female, age 72, unknown 44.1
2750 Male, age 76, both hemispheres 39.8
Inferior colliculus
nTPM: 43.1
2097 Female, age 72, unknown 47.5
1848 Female, age 42, unknown 43.9
1890 Male, age 53, unknown 40.7
2849 Male, age 72, unknown 40.3
Median raphe nucleus
nTPM: 41.9
2220 Male, age 76, midline 41.9
Periaquaductal grey, anterior
nTPM: 49.2
1795 Male, age 51, unknown 49.6
2502 Female, age 75, unknown 49.4
1947 Male, age 18, unknown 48.6
Periaquaductal grey, dorsal
nTPM: 41.6
2850 Male, age 76, both hemispheres 44.6
1840 Male, age 53, unknown 43.7
2464 Female, age 72, unknown 39.4
1831 Male, age 72, unknown 38.8
Periaquaductal grey, lateral
nTPM: 46.9
2272 Male, age 74, both hemispheres 50.3
2140 Male, age 76, both hemispheres 45.3
2053 Male, age 18, unknown 45.1
Pretectal area
nTPM: 47.7
2273 Male, age 74, both hemispheres 53.9
2007 Male, age 72, unknown 52.0
1817 Female, age 42, unknown 50.4
2224 Female, age 72, unknown 50.3
1815 Male, age 53, unknown 49.1
2667 Female, age 75, unknown 48.9
1816 Male, age 51, unknown 48.6
1944 Female, age 72, unknown 45.7
2825 Male, age 18, unknown 43.8
2407 Male, age 75, both hemispheres 42.0
2316 Male, age 76, right hemisphere 40.3
Red nucleus
nTPM: 42.2
1821 Female, age 72, unknown 46.3
1904 Male, age 53, unknown 45.2
2725 Female, age 75, unknown 44.7
2785 Male, age 18, unknown 44.4
1865 Male, age 51, unknown 42.9
2503 Female, age 72, unknown 42.6
2769 Male, age 72, unknown 42.0
1954 Female, age 42, unknown 41.4
2584 Male, age 75, left hemisphere 41.3
2227 Male, age 72, unknown 40.9
2588 Male, age 74, left hemisphere 38.5
2823 Male, age 76, right hemisphere 35.8
Substantia nigra
nTPM: 47.8
1916 Female, age 42, unknown 56.1
1851 Male, age 51, unknown 53.2
2665 Male, age 74, both hemispheres 51.8
2241 Male, age 72, unknown 50.4
1889 Female, age 72, unknown 47.9
2409 Female, age 72, unknown 45.3
1941 Male, age 53, unknown 44.6
2583 Male, age 75, right hemisphere 43.9
2590 Female, age 75, unknown 43.5
2699 Male, age 18, unknown 41.0
Superior colliculus
nTPM: 44.0
2261 Male, age 18, unknown 49.8
1796 Male, age 53, unknown 49.2
1913 Female, age 42, unknown 45.3
2587 Male, age 74, left hemisphere 44.8
2668 Female, age 75, unknown 43.7
1995 Male, age 72, unknown 43.4
2087 Female, age 72, unknown 42.6
1839 Male, age 51, unknown 41.5
2664 Male, age 75, both hemispheres 40.2
1895 Male, age 76, right hemisphere 39.6
Ventral tegmental area
nTPM: 45.7
1915 Female, age 42, unknown 51.4
2410 Female, age 72, unknown 49.6
1942 Male, age 51, unknown 44.9
2021 Male, age 53, unknown 44.2
2218 Male, age 76, both hemispheres 43.5
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.4
Samples: 183

Max nTPM: 100.6
Min nTPM: 22.9
Std nTPM: 10.2
Median nTPM: 39.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 100.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 72.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 64.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 64.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 64.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 63.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 63.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 58.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.4
FF:10158-103A5 76 years, female 47.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.8
Samples: 4

Max nTPM: 56.8
Min nTPM: 48.6
Sample A Female 56.8
Sample B Female 55.6
Sample C Male 50.2
Sample D Male 48.6
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 63.9
Min nTPM: 41.7
Sample A Female 63.9
Sample B Female 42.5
Sample C Male 52.2
Sample D Male 41.7
Periaqueductal gray
nTPM: 48.5
Samples: 3

Max nTPM: 53.8
Min nTPM: 45.2
Sample B Female 46.5
Sample C Male 53.8
Sample D Male 45.2
Superior colliculi
nTPM: 59.9
Samples: 4

Max nTPM: 80.5
Min nTPM: 46.5
Sample A Female 64.0
Sample B Female 80.5
Sample C Male 48.6
Sample D Male 46.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 70.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.0
Samples: 4

Max nTPM: 71.5
Min nTPM: 67.5
Sample A Male 71.2
Sample B Male 67.5
Sample C Female 69.8
Sample D Female 71.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69626699 Antisense, RP_050428_01_B09, Mouse strain C57BL/6J (56 days, male) 3.1
70920093 Antisense, RP_050713_02_F08, Mouse strain C57BL/6J (56 days, male) 0.7

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