MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:214.9 nTPM
HPA Brain:303.4 nTPM
GTEx:214.9 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Pig:335.6 nTPM
Mouse:344.3 nTPM
Allen mouse:15.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 303.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 199.7
2219 Male, age 76, both hemispheres 259.1
2019 Male, age 18, unknown 254.6
2586 Male, age 75, left hemisphere 254.4
1827 Male, age 72, unknown 239.8
2828 Female, age 72, unknown 226.6
2411 Female, age 72, unknown 223.4
1870 Female, age 42, unknown 153.7
2666 Male, age 74, left hemisphere 148.9
1833 Male, age 53, unknown 119.0
1830 Male, age 51, unknown 117.5
Dorsal raphe nucleus
nTPM: 245.6
2298 Female, age 72, unknown 376.8
2047 Male, age 72, unknown 264.0
1828 Male, age 53, unknown 234.6
2750 Male, age 76, both hemispheres 229.1
2016 Female, age 72, unknown 123.7
Inferior colliculus
nTPM: 119.9
2097 Female, age 72, unknown 158.6
1848 Female, age 42, unknown 115.9
1890 Male, age 53, unknown 105.6
2849 Male, age 72, unknown 99.3
Median raphe nucleus
nTPM: 303.4
2220 Male, age 76, midline 303.4
Periaquaductal grey, anterior
nTPM: 241.8
1795 Male, age 51, unknown 309.5
1947 Male, age 18, unknown 222.8
2502 Female, age 75, unknown 193.0
Periaquaductal grey, dorsal
nTPM: 143.3
2850 Male, age 76, both hemispheres 160.1
1831 Male, age 72, unknown 152.2
1840 Male, age 53, unknown 136.5
2464 Female, age 72, unknown 124.3
Periaquaductal grey, lateral
nTPM: 155.4
2272 Male, age 74, both hemispheres 201.4
2140 Male, age 76, both hemispheres 139.8
2053 Male, age 18, unknown 124.9
Pretectal area
nTPM: 277.9
2667 Female, age 75, unknown 447.0
1816 Male, age 51, unknown 403.5
1944 Female, age 72, unknown 398.3
2007 Male, age 72, unknown 368.5
1817 Female, age 42, unknown 337.0
2224 Female, age 72, unknown 270.5
1815 Male, age 53, unknown 263.9
2273 Male, age 74, both hemispheres 157.4
2825 Male, age 18, unknown 156.4
2407 Male, age 75, both hemispheres 144.0
2316 Male, age 76, right hemisphere 110.6
Red nucleus
nTPM: 156.7
2785 Male, age 18, unknown 236.1
1954 Female, age 42, unknown 201.8
1821 Female, age 72, unknown 195.9
2725 Female, age 75, unknown 163.0
2503 Female, age 72, unknown 156.9
1904 Male, age 53, unknown 151.8
2227 Male, age 72, unknown 144.0
2769 Male, age 72, unknown 142.7
1865 Male, age 51, unknown 142.5
2584 Male, age 75, left hemisphere 125.4
2588 Male, age 74, left hemisphere 113.1
2823 Male, age 76, right hemisphere 107.6
Substantia nigra
nTPM: 280.4
1916 Female, age 42, unknown 513.7
1941 Male, age 53, unknown 368.9
2665 Male, age 74, both hemispheres 344.5
1851 Male, age 51, unknown 324.8
1889 Female, age 72, unknown 317.8
2409 Female, age 72, unknown 240.1
2241 Male, age 72, unknown 226.7
2699 Male, age 18, unknown 190.6
2590 Female, age 75, unknown 158.2
2583 Male, age 75, right hemisphere 118.2
Superior colliculus
nTPM: 178.0
2087 Female, age 72, unknown 354.8
1796 Male, age 53, unknown 242.2
2261 Male, age 18, unknown 227.1
2668 Female, age 75, unknown 174.9
2664 Male, age 75, both hemispheres 157.9
1913 Female, age 42, unknown 152.2
1839 Male, age 51, unknown 131.5
1895 Male, age 76, right hemisphere 113.4
1995 Male, age 72, unknown 113.3
2587 Male, age 74, left hemisphere 113.1
Ventral tegmental area
nTPM: 270.8
2410 Female, age 72, unknown 370.2
2218 Male, age 76, both hemispheres 345.9
1915 Female, age 42, unknown 332.8
2021 Male, age 53, unknown 217.3
1942 Male, age 51, unknown 213.5
2223 Female, age 72, unknown 144.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 214.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 214.9
Samples: 183

Max nTPM: 894.1
Min nTPM: 9.6
Std nTPM: 194.7
Median nTPM: 139.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 894.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 840.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 834.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 834.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 759.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 725.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 692.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 665.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 610.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 598.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 559.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.6
FF:10158-103A5 76 years, female 9.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 335.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 335.5
Samples: 4

Max nTPM: 662.4
Min nTPM: 59.9
Sample A Female 662.4
Sample B Female 218.3
Sample C Male 401.5
Sample D Male 59.9
Midbrain
nTPM: 246.3
Samples: 4

Max nTPM: 474.4
Min nTPM: 74.3
Sample A Female 74.3
Sample B Female 199.2
Sample C Male 474.4
Sample D Male 237.2
Periaqueductal gray
nTPM: 180.3
Samples: 3

Max nTPM: 246.4
Min nTPM: 141.6
Sample B Female 152.9
Sample C Male 246.4
Sample D Male 141.6
Superior colliculi
nTPM: 241.6
Samples: 4

Max nTPM: 368.7
Min nTPM: 128.3
Sample A Female 264.9
Sample B Female 128.3
Sample C Male 368.7
Sample D Male 204.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 344.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 344.3
Samples: 4

Max nTPM: 368.0
Min nTPM: 313.6
Sample A Male 362.3
Sample B Male 333.2
Sample C Female 313.6
Sample D Female 368.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
68196914 Antisense, RP_041116_01_D07, Mouse strain C57BL/6J (56 days, male) 15.7

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