A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
443.8
nTPM
Monaco:
134.6
nTPM
Schmiedel:
42.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
443.8
HPA sample
nTPM
Memory B-cell nTPM: 443.8
Samples: 6
Max nTPM: 947.8
Min nTPM: 218.1
P10809_1017
218.1
P10809_1025
411.3
P10809_1044
947.8
P10809_1063
351.1
P10809_1092
383.7
P10809_1105
350.7
Naive B-cell nTPM: 389.6
Samples: 6
Max nTPM: 738.1
Min nTPM: 177.2
P10809_1011
177.2
P10809_1029
361.4
P10809_1048
738.1
P10809_1067
338.4
P10809_1091
355.5
P10809_1104
366.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 128.0
Samples: 4
Max nTPM: 192.3
Min nTPM: 99.4
RHH5310_R3677
114.1
RHH5218_R3590
106.2
RHH5247_R3619
192.3
RHH5276_R3648
99.4
Naive B-cell nTPM: 134.5
Samples: 4
Max nTPM: 172.3
Min nTPM: 108.0
RHH5308_R3675
137.7
RHH5216_R3588
172.3
RHH5245_R3617
120.1
RHH5274_R3646
108.0
Non-switched memory B-cell nTPM: 111.9
Samples: 4
Max nTPM: 141.4
Min nTPM: 91.2
RHH5309_R3676
103.3
RHH5217_R3589
141.4
RHH5246_R3618
111.7
RHH5275_R3647
91.2
Plasmablast nTPM: 116.9
Samples: 4
Max nTPM: 135.6
Min nTPM: 106.7
RHH5312_R3679
106.7
RHH5220_R3592
113.7
RHH5249_R3621
111.6
RHH5278_R3650
135.6
Switched memory B-cell nTPM: 113.9
Samples: 4
Max nTPM: 133.4
Min nTPM: 98.3
RHH5311_R3678
118.3
RHH5219_R3591
133.4
RHH5248_R3620
98.3
RHH5277_R3649
105.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
Schmiedel sample id
TPM
Naive B-cell TPM: 42.2
Samples: 91
Max TPM: 51.1
Min TPM: 31.1
B_CELL_NAIVE_1
51.1
B_CELL_NAIVE_2
50.2
B_CELL_NAIVE_3
49.8
B_CELL_NAIVE_4
48.5
B_CELL_NAIVE_5
48.5
B_CELL_NAIVE_6
48.3
B_CELL_NAIVE_7
48.0
B_CELL_NAIVE_8
47.9
B_CELL_NAIVE_9
47.5
B_CELL_NAIVE_10
47.4
B_CELL_NAIVE_11
47.1
B_CELL_NAIVE_12
46.7
B_CELL_NAIVE_13
46.7
B_CELL_NAIVE_14
46.7
B_CELL_NAIVE_15
46.2
B_CELL_NAIVE_16
45.7
B_CELL_NAIVE_17
45.5
B_CELL_NAIVE_18
45.1
B_CELL_NAIVE_19
44.9
B_CELL_NAIVE_20
44.8
B_CELL_NAIVE_21
44.7
B_CELL_NAIVE_22
44.7
B_CELL_NAIVE_23
44.7
B_CELL_NAIVE_24
44.4
B_CELL_NAIVE_25
44.4
B_CELL_NAIVE_26
44.3
B_CELL_NAIVE_27
44.3
B_CELL_NAIVE_28
44.1
B_CELL_NAIVE_29
44.1
B_CELL_NAIVE_30
43.9
B_CELL_NAIVE_31
43.8
B_CELL_NAIVE_32
43.8
B_CELL_NAIVE_33
43.5
B_CELL_NAIVE_34
43.5
B_CELL_NAIVE_35
43.4
B_CELL_NAIVE_36
43.4
B_CELL_NAIVE_37
43.3
B_CELL_NAIVE_38
43.2
B_CELL_NAIVE_39
43.1
B_CELL_NAIVE_40
43.1
B_CELL_NAIVE_41
42.7
B_CELL_NAIVE_42
42.7
B_CELL_NAIVE_43
42.5
B_CELL_NAIVE_44
42.4
B_CELL_NAIVE_45
42.0
B_CELL_NAIVE_46
41.8
B_CELL_NAIVE_47
41.7
B_CELL_NAIVE_48
41.6
B_CELL_NAIVE_49
41.5
B_CELL_NAIVE_50
41.4
B_CELL_NAIVE_51
41.3
B_CELL_NAIVE_52
41.0
B_CELL_NAIVE_53
40.9
B_CELL_NAIVE_54
40.8
B_CELL_NAIVE_55
40.8
B_CELL_NAIVE_56
40.7
B_CELL_NAIVE_57
40.7
B_CELL_NAIVE_58
40.5
B_CELL_NAIVE_59
40.5
B_CELL_NAIVE_60
40.5
B_CELL_NAIVE_61
40.4
B_CELL_NAIVE_62
40.3
B_CELL_NAIVE_63
40.3
B_CELL_NAIVE_64
40.2
B_CELL_NAIVE_65
40.0
B_CELL_NAIVE_66
40.0
B_CELL_NAIVE_67
39.7
B_CELL_NAIVE_68
39.6
B_CELL_NAIVE_69
39.5
B_CELL_NAIVE_70
39.3
B_CELL_NAIVE_71
39.3
B_CELL_NAIVE_72
39.3
B_CELL_NAIVE_73
39.2
B_CELL_NAIVE_74
39.1
B_CELL_NAIVE_75
39.1
B_CELL_NAIVE_76
38.9
B_CELL_NAIVE_77
38.8
B_CELL_NAIVE_78
38.7
B_CELL_NAIVE_79
38.2
B_CELL_NAIVE_80
38.2
B_CELL_NAIVE_81
38.1
B_CELL_NAIVE_82
37.9
B_CELL_NAIVE_83
37.7
B_CELL_NAIVE_84
37.6
B_CELL_NAIVE_85
37.5
B_CELL_NAIVE_86
37.3
B_CELL_NAIVE_87
37.2
B_CELL_NAIVE_88
35.6
B_CELL_NAIVE_89
34.9
B_CELL_NAIVE_90
32.2
B_CELL_NAIVE_91
31.1
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The Human Protein Atlas project is funded
