A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
389.2
nTPM
Monaco:
155.5
nTPM
Schmiedel:
61.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
389.2
HPA sample
nTPM
NK-cell nTPM: 389.2
Samples: 6
Max nTPM: 597.8
Min nTPM: 189.1
P10809_1013
189.1
P10809_1033
597.8
P10809_1052
368.8
P10809_1071
472.1
P10809_1093
248.9
P10809_1103
458.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.5
Monaco sample
nTPM
NK-cell nTPM: 155.5
Samples: 4
Max nTPM: 186.6
Min nTPM: 138.5
RHH5316_R3683
138.5
RHH5224_R3596
186.6
RHH5253_R3625
139.6
RHH5282_R3654
157.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.0
Schmiedel sample id
TPM
NK-cell TPM: 61.0
Samples: 90
Max TPM: 72.4
Min TPM: 49.6
NK_1
72.4
NK_2
71.8
NK_3
71.3
NK_4
70.8
NK_5
70.3
NK_6
69.0
NK_7
68.7
NK_8
68.4
NK_9
67.9
NK_10
67.1
NK_11
66.9
NK_12
66.7
NK_13
66.4
NK_14
66.4
NK_15
66.4
NK_16
66.0
NK_17
65.6
NK_18
65.4
NK_19
64.8
NK_20
64.6
NK_21
64.6
NK_22
64.5
NK_23
64.5
NK_24
64.3
NK_25
64.2
NK_26
64.1
NK_27
64.1
NK_28
64.0
NK_29
63.9
NK_30
63.4
NK_31
63.2
NK_32
62.8
NK_33
62.8
NK_34
62.7
NK_35
62.6
NK_36
62.6
NK_37
62.4
NK_38
62.3
NK_39
62.1
NK_40
62.1
NK_41
62.0
NK_42
61.9
NK_43
61.5
NK_44
61.4
NK_45
61.2
NK_46
61.1
NK_47
60.7
NK_48
60.7
NK_49
60.1
NK_50
60.0
NK_51
59.9
NK_52
59.8
NK_53
59.8
NK_54
59.7
NK_55
59.7
NK_56
59.4
NK_57
59.3
NK_58
59.0
NK_59
59.0
NK_60
59.0
NK_61
58.7
NK_62
58.5
NK_63
58.3
NK_64
58.1
NK_65
58.1
NK_66
58.0
NK_67
57.8
NK_68
57.8
NK_69
57.6
NK_70
57.6
NK_71
57.2
NK_72
57.1
NK_73
57.0
NK_74
56.8
NK_75
56.1
NK_76
55.9
NK_77
55.8
NK_78
55.7
NK_79
55.5
NK_80
54.7
NK_81
53.9
NK_82
52.9
NK_83
52.7
NK_84
52.5
NK_85
51.9
NK_86
51.9
NK_87
51.5
NK_88
50.8
NK_89
50.5
NK_90
49.6
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